1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GAGTCACTTCGTTAATACTGGCGCACTTGATGAGCTCATTCTTGCCTTCTCTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattctcggatacaatttattaattatcaatcaatgcggtatgccttatcttaatcaacggttcatgtgcctgcag
species | Glycine max |
transcript | GLYMA17G07050.2 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGA-AAG GCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACACTTATGTGTGTEST: gi|254332042|gb|GR846245.1|GR846245
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAG GCTTCAGAA-TTTGGAGCATGATATCACA-GGAGCTTACATTTAEST: gi|120534217|gb|EH262350.1|EH262350
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTA
EST: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAG GCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTEST: gi|105633674|gb|DW247037.1|DW247037
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: ACAACATAAAATGATGGAGAAG GCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTEST: gi|10710524|gb|BF010242.1|BF010242
genomic: ACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAG GCTTCAGACATNTGGAGCATGATATCACAACGAGCTTACATTTATGTGTGT
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTCACTTCGTTAATACTGGCGCACTTGATGAGCTCATTCTTGCCTTCTCTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattctcggatacaatttattaattatcaatcaatgcggtatgccttatcttaatcaacggttcatgtgcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA