1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GAGTCACTTCGTTAATACTGGCGCACTTGATGAGCTCATTCTTGCCTTCTCTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattctcggatacaatttattaattatcaatcaatgcggtatgccttatcttaatcaacggttcatgtgcctgcag
species | Glycine max |
transcript | GLYMA17G07050.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGA-AAG GCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACACTTATGTGTGTEST: gi|15203188|gb|BI425956.1|BI425956
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGTAGAAG GCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTEST: gi|15202467|gb|BI425417.1|BI425417
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAG GCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTEST: gi|21594304|gb|BQ610119.1|BQ610119
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAG GCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTEST: gi|214006112|gb|DB990465.1|DB990465
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: AACATAAAATGATGGAGAAG GCTTCAGAAATTTGGAGCATGATTTTTCAAGGAGCTTACATTTATGTGTGTEST: gi|254332042|gb|GR846245.1|GR846245
genomic: AACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAG GCTTCAGAA-TTTGGAGCATGATATCACA-GGAGCTTACATTTAEST: gi|105633674|gb|DW247037.1|DW247037
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTA
EST: ACAACATAAAATGATGGAGAAG GCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTEST: gi|16346078|gb|BI971673.1|BI971673
genomic: ACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAG GCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTEST: gi|58024838|gb|CX711579.1|CX711579
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAG GCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTEST: gi|7147143|gb|AW509065.1|AW509065
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAG GCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTEST: gi|10710524|gb|BF010242.1|BF010242
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAG GCTTCAGACATNTGGAGCATGATATCACAACGAGCTTACATTTATGTGTGTEST: gi|254341893|gb|GR853030.1|GR853030
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAG GCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTEST: gi|254346951|gb|GR856673.1|GR856673
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAG GCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTEST: gi|58020989|gb|CX707731.1|CX707731
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAG GCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTEST: gi|14258698|gb|BG881606.1|BG881606
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAG GCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGTEST: gi|9258034|gb|BE346181.1|BE346181
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
EST: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAG GCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
genomic: CTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattc ... gtgcctgcagGCTTCAGAAATTTGGAGCATGATATCACAAGGAGCTTACATTTATGTGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTCACTTCGTTAATACTGGCGCACTTGATGAGCTCATTCTTGCCTTCTCTCGAGAGGGACCCACCAAGGAGTATGTACAACATAAAATGATGGAGAAGgtacttattctcggatacaatttattaattatcaatcaatgcggtatgccttatcttaatcaacggttcatgtgcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA