Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   		32  
 5'  3'   		33  
 5'  3'   		34  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTTAGAGAAAGTATGTAAGGACCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATGgtattatcttacagagcaatcttttatggcattatagacagcatgaaaattagttatgtcctctttggtaaatataataataatctctgttattttccaattcaatttgtag

Basic information

species Glycine max
transcript GLYMA17G04890.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04890.1 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os07g37750.1 (Oryza sativa), 5'ss of exon 13
GATGTTAGAGAAAGTATGTAAGGACCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATGgtattatcttacagagcaatcttttatggcattataga--cagcatgaaaattagttatgtcctctttggtaaatataataataatctctgttattttccaattcaatttgtag
|||| | |||||||| || |||||  |||| |||||||  ||||| ||||| |||||||||||||| |||||||  |||||| | |||||||| |||||        |||  | | | | || |  || || | |   || ||      ||  ||| ||| | | | || || | ||   ||  | | | | | ||               
GATGCTGGAGAAAGTCTGCAAGGATTCACAAATGCTTGCAGACATGTTTGTAAATTATGATTGTGACCTTGAGGGGCCAAACCTTTTTGAACGCATGgtgag----cacaatgaattttatttttacactagaaaactagtatctcttctaactatctccacat-gatatatctgattg-aacatgtatcactatcag-------------

upper sequence: GLYMA17G04890.1 (Glycine max), 5'ss of exon 16
lower sequence: AT3G43300.2 (Arabidopsis thaliana), 5'ss of exon 15
GATGTTAGAGAAAGTATGTAAGGACCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATGgtattatcttacagagcaatcttttatggcattatagacagcatgaaaattagttatgtcctctttggtaaatataa-taataatctctgttatt-ttccaattcaatttgtag
|||| | |||||||| || || || || ||||||||||||||  | | ||| || |||||||||||||| ||||| |||||||||||||| || ||||| |      |     || ||||||||   | ||         || |  | ||  ||||      |||||  ||| | | | | |   |||| || ||  | || |        
GATGCTTGAGAAAGTCTGCAAAGATCCTCAGATGCTTGTTGATGTGTATGTAAACTATGATTGTGATCTAGAGGCCCCAAACTTGTTTGAGCGCATGgtgt-gctccattttccattcttttatataactac--------tgtacttcagcaatgtgac---tggtagttatgactcacattacatgtttttattttactttag-------

upper sequence: GLYMA17G04890.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 16
GATGTTAGAGAAAGTATGTAAGGACCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATGgtattatcttacagagcaatcttttatggcattatagacagcatgaaaattagttatgtcctctttggtaaatataataataatctctgttattttccaattcaatttgtag
|||| | |||||||| ||||| || || ||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||||| || ||||||| |||| ||| |  | |   ||||    || ||         |   |  | |   | ||||| | || || | | |  ||||  | ||   |||  || || || |   
GATGCTTGAGAAAGTTTGTAAAGATCCCCAGATGCTTGTTGACATATATGTGAACTATGATTGTGATCTTGAGGCCCCAAACTTGTTTGAGCGCATGgtataatctaacatattattgcattataatgtt-tatttgttgataggttctgcttgattctcttggatatatctcaaacgaatccattttgccttcttat-catttag---

upper sequence: GLYMA17G04890.1 (Glycine max), 5'ss of exon 16
lower sequence: PP1S382_36V6.1 (Physcomitrella patens), 5'ss of exon 7
GATGTTAGAGAAAGTATGTAAGGACCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATGgtattatcttacagagcaatcttttatggcat-tatagacagcatgaaaattagttatgtcctctttggtaaatataataataatctctgttattttccaattcaatttgtag
|||| | ||||| |  || || || || |||||||| |  ||||| |||||||| || ||||||||||| || ||  | |||||||||||||| |||||||       |  | ||   |   |  |||  | |     |  ||  |    || | ||  |   ||    || |  | ||   ||    | ||  | |     | |     
GATGCTGGAGAAGGCTTGCAACGATCCGCAGATGCTGGCAGACATTTTTGTGAACTACGATTGTGATCTGGACGCTACGAACTTGTTTGAACGCATGgtatggagc--cgaaacatggtgcaagtgcacgtttgtttggtctggga--cggtca-gtggtgcgtga-ggatgtggtgatg--ctgacatgttgacaagcgagaat-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193335396|gb|FK298024.1|FK298024
EST:     TTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATG                         GTTACTACTCTGTCCAAAATAGCTCAAGGAACTCAAAATACCGATCCAAAT
genomic: TTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATGgtattatctt ... caatttgtagGTTACTACTCTGTCCAAAATAGCTCAAGGAACTCAAAATACCGATCCAAAT
EST: gi|193405614|gb|FK372179.1|FK372179
EST:     TTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATG                         GTTACTACTCTGTCCAAAATAGCTCAAGGAACTCAAAATACCGATCCAAAT
genomic: TTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATGgtattatctt ... caatttgtagGTTACTACTCTGTCCAAAATAGCTCAAGGAACTCAAAATACCGATCCAAAT
EST: gi|193342108|gb|FK308986.1|FK308986
EST:     TTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATG                         GTTACTACTCTGTCCAAAATAGCTCAAGGAACTCAAAATACCGATCCAAAT
genomic: TTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATGgtattatctt ... caatttgtagGTTACTACTCTGTCCAAAATAGCTCAAGGAACTCAAAATACCGATCCAAAT