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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACAGGCACCTATTGTTAATAATCCTGCTTTTTGGGAGAGAGTAGGTATCGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGgtatgtggacattttggatactgattagcattactctcattcagttatgtaagcttacattcattattttctgcag

Basic information

species Glycine max
transcript GLYMA16G26850.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26850.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv08s0007g07570.t01 (Vitis vinifera), 5'ss of exon 14
AGTACAGGCACCTATTGTTAATAATCCTGCTTTTTGGGAGAGAGTAGGTATCGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGgtat-gtggacattttg----gatactgattagcatt-actctcattcagttat-------gtaagcttacattcattattttctgcag
|||||||||||| ||||| ||||||||||| || |||||  |  | ||| | ||    | ||||||||| |||||||||||||||||||||||||| ||||||| ||   | || ||     || ||   |||  || ||  | ||   |||||        ||  || |    ||||| |||||| ||
AGTACAGGCACCCATTGTCAATAATCCTGCCTTCTGGGAACGGCTGGGTCTTGATACTTTTGGCACTGACACCCTGTTCTTTGCATTTTACTATCAGCAGgtattgttagctttctgtaacaatccttcatagtgtttaccattatgtggttatcttgagcatattctcaagcgcattactttctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193439854|gb|FK409431.1|FK409431
EST:     TTGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAG                         AACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
genomic: TCGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGgtatgtggac ... ttttctgcagAACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
EST: gi|213589145|gb|DB981159.1|DB981159
EST:     TATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACA-                         ATGCACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTG
genomic: TATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGgtatgtggac ... ttttctgcagA-ACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTG
EST: gi|213590071|gb|DB984469.1|DB984469
EST:     TCGAACAATATGGCACTGATAACCTGTTCTTTGCATTTTACTATCAACAG                         AAGAGTAACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
genomic: TCGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGgtatgtggac ... ttttctgcagAACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
EST: gi|151413077|gb|EV282885.1|EV282885
EST:     TCGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAG                         AACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
genomic: TCGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGgtatgtggac ... ttttctgcagAACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
EST: gi|209728281|gb|BW658493.1|BW658493
EST:     TCGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAG                         AACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
genomic: TCGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGgtatgtggac ... ttttctgcagAACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
EST: gi|193373803|gb|FK343361.1|FK343361
EST:     TTGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAGCAG                         AACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
genomic: TCGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGgtatgtggac ... ttttctgcagAACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
EST: gi|151398633|gb|EV268504.1|EV268504
EST:     TCGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAG                         AACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
genomic: TCGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGgtatgtggac ... ttttctgcagAACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
EST: gi|209718498|gb|BW677668.1|BW677668
EST:     TCGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAG                         AACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
genomic: TCGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGgtatgtggac ... ttttctgcagAACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
EST: gi|213604440|gb|DB983500.1|DB983500
EST:     TCGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAG                         AACACTTAGCTACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
genomic: TCGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGgtatgtggac ... ttttctgcagAACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG