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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATGGTGATTGGGTTCTCTCTAGGTCTGGGACCCATCCCTTGGCTTATAATGTCTGAGgtatgaaatacttagtatgcaaaacatctgaaggatctagtaattgttgcattatttactatctagttaatgcctgcaggttcccttgttttttttcttt...

Basic information

species Glycine max
transcript GLYMA16G25310.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25310.2 (Glycine max), 5'ss of exon 16
lower sequence: Vv04s0023g01860.t01 (Vitis vinifera), 5'ss of exon 16
GCTATGGTGATTGGGTTCTCTCTAGGTCTGGGACCCATCCCTTGGCTTATAATGTCTGAGgtatgaaatacttag---tatgcaaaacatctgaaggatctagt-aattgttgcattatttactatcta-gttaatgcctgcaggttcccttgttttttttcttt
||| |||| |||   |||||||||||  | ||| |||| |||||| |||||||||| |||||||||||||||      |||  |||  |    || | | |    || | | |||  |       || | | ||    ||    | |      ||   ||     
GCTTTGGTAATTACCTTCTCTCTAGGAGTTGGAGCCATTCCTTGGGTTATAATGTCCGAGgtatgaaatactagactttatataaaggacagaaaagcttttcccaaatttggcacaaaaggtcttcgatgctataaactatctgatgaggaattcaatt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51341717|gb|CO983034.1|CO983034
EST:     TTGGGTTCTCTCTAGGTCTGGGACCCATCCCTTGGCTTATAATGTCTGAG                         ATACTTCCAGTGAATATAAAGGGCCTTGCTGGCAGCATAGCGACAATGGGA
genomic: TTGGGTTCTCTCTAGGTCTGGGACCCATCCCTTGGCTTATAATGTCTGAGgtatgaaata ... tgcttttcagATACTTCCAGTGAATATAAAGGGCCTTGCTGGCAGCATAGCGACAATGGGA
EST: gi|22523687|gb|BU082498.1|BU082498
EST:     TTGGGTTCTCTCTAGGTCTGGGACCCATCCCTTGGCTTATAATGTCTGAG                         ATACTTCCAGTGAATATAAAGGGCCTTGCTGGCAGCATAGCGACAATGGGA
genomic: TTGGGTTCTCTCTAGGTCTGGGACCCATCCCTTGGCTTATAATGTCTGAGgtatgaaata ... tgcttttcagATACTTCCAGTGAATATAAAGGGCCTTGCTGGCAGCATAGCGACAATGGGA
EST: gi|16280886|gb|BI944198.1|BI944198
EST:     TTGGGTTCTCTCTAGGTCTGGGACCCATCCCTTGGCTTATAATGTCTGAG                         ATACTTCCAGTGAATATAAAGGGCCTTGCTGGCAGCATAGCGACAATGGGA
genomic: TTGGGTTCTCTCTAGGTCTGGGACCCATCCCTTGGCTTATAATGTCTGAGgtatgaaata ... tgcttttcagATACTTCCAGTGAATATAAAGGGCCTTGCTGGCAGCATAGCGACAATGGGA
EST: gi|192319001|gb|FK009053.1|FK009053
EST:     TTGGGTTCTCTCTAGGTCTGGGACCCATCCCTTGGCATATAATGTTTGAG                         ATACTTCCAGTGAATATAAAGGGCCTTGCTGGCAGCATAGCGACAATGGGA
genomic: TTGGGTTCTCTCTAGGTCTGGGACCCATCCCTTGGCTTATAATGTCTGAGgtatgaaata ... tgcttttcagATACTTCCAGTGAATATAAAGGGCCTTGCTGGCAGCATAGCGACAATGGGA
EST: gi|192319000|gb|FK009052.1|FK009052
EST:     TTGGGTTCTCTCTAGGTCTGGGACCCATCCCTTGGCATATAATGTCTGAG                         ATACTTCCAGTGAATATAAAGGGCCTTGCTGGCAGCATAGCGACAATGGGA
genomic: TTGGGTTCTCTCTAGGTCTGGGACCCATCCCTTGGCTTATAATGTCTGAGgtatgaaata ... tgcttttcagATACTTCCAGTGAATATAAAGGGCCTTGCTGGCAGCATAGCGACAATGGGA