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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCACCGCTCATGCATTGAGAGAGAGATTATATCATTATTGGATCATCCTTTTCTTCCAACACTATACACCTCATTTCAGgtaaatataacacatctgtatgttgaaccgagcaacgactgaagtgtaaagtgtgatctacatattgttctagtagacaacttataatccgttcagcagt...

Basic information

species Glycine max
transcript GLYMA16G19560.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19560.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G032351_T01 (Zea mays), 5'ss of exon 13
GTTCACCGCTCATGCATTGAGAGAGAGATTATATCATTATTGGATCATCCTTTTCTTCCAACACTATACACCTCATTTCAGgtaaatataacacatctgtatgttgaaccgagcaacgactgaagtgta---aagtgtgatctacatattgttctagtagacaacttataatccgttcagcagt
||||| ||  | || || || ||||| ||    ||| ||||||||||||||||||| |||||| |||| || ||||| ||||| | | | |          |||||    | ||   | || |  |  |   |||  || |  | | ||   |     | | |||||    | ||||       
GTTCATCGAGCTTGTATGGAAAGAGAAATATACTCACTATTGGATCATCCTTTTCTCCCAACATTATATACTTCATTCCAGgtcagtcttatgtgctatgctgttgtgttgtgccttgtcttagattcatttaaggttgctaaataaataaatggtacacataacttcatctgcgtttcta---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120530711|gb|EH258844.1|EH258844
EST:     TATCATTATTGGATCATCCTTTTCTTCCAACACTATACACCTCATTTCAG                         ACTCCTACACATGTATGTTTGATTACTGACTTCTTTCCTGGAGGAGAGTTG
genomic: TATCATTATTGGATCATCCTTTTCTTCCAACACTATACACCTCATTTCAGgtaaatataa ... atctcaacagACTCCTACACATGTATGTTTGATTACTGACTTCTTTCCTGGAGGAGAGTTG
EST: gi|120530273|gb|EH258407.1|EH258407
EST:     TATCATTATTGGATCATCCTTTTCTTCCAACACTATACACCTCATTTCAG                         ACTCCTACACATGTATGTTTGATTACTGACTTCTTTCCTGGAGGAGAGTTG
genomic: TATCATTATTGGATCATCCTTTTCTTCCAACACTATACACCTCATTTCAGgtaaatataa ... atctcaacagACTCCTACACATGTATGTTTGATTACTGACTTCTTTCCTGGAGGAGAGTTG