1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
AAACCTCTTGTTTTGGCCCTCTCCAATCCAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataagagataagaacatctgtctcttgaactggttgagagatttcattgatttgatgcaaaaatgatgcattattcccacaacttatctttgcttgtcttcaaaaacatag
species | Glycine max |
transcript | GLYMA16G08460.2 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAG GGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAGEST: gi|6566798|gb|AW234430.1|AW234430
genomic: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataag ... aaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
EST: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAG GGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAAEST: gi|298199413|gb|HO042776.1|HO042776
genomic: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataag ... aaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
EST: CAACTTCACAGTCTGAGCGTACAGCTGAAGAGGCTTACGAATGGAGTGAG GGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAGEST: gi|19453207|gb|BM954617.1|BM954617
genomic: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataag ... aaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
EST: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAG GGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAGEST: gi|7326720|gb|AW620518.1|AW620518
genomic: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataag ... aaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
EST: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAG GGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
genomic: CAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataag ... aaaaacatagGGTCGTGCGATTTTCGCTAGTGGAAGTCCATTTGATCCTGTAGAATACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACCTCTTGTTTTGGCCCTCTCCAATCCAACTTCACAGTCTGAGTGTACAGCTGAAGAGGCTTACGAATGGAGTGAGgtaaaataagagataagaacatctgtctcttgaactggttgagagatttcattgatttgatgcaaaaatgatgcattattcccacaacttatctttgcttgtcttcaaaaacatag
- - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG