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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaacttctgcttggattattcaaagttttaaattgcaataatcttgactatttttctgtttatcaattgtttttctcag

Basic information

species Glycine max
transcript GLYMA15G01680.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 5'ss of exon 16
GTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagt------gaaacttctgcttggattattcaaagttttaaattgcaataatcttgactatttttctgtttatcaattgtttttctcag
|| || ||||||| ||| ||||| |||||||||||||||||||||||||| || || ||||| || |||||| | |||||||| || || ||||  ||      || | | |||| ||  |  |     || || ||||    | | ||    |||||||||  ||                  
GTCACCACGATGTATCACTTGGATCGCCCTATGTACTTGTTGGGATATCTAGCGAATCAAAGCCGAGTTTATCTTATTGACAAGGAATTCAAgtgtgttttcttgataatactgcctgcttattgtctggtgttgaattct--tgaactaacatatttttcttgttgcag--------------

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 16
GTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaacttctgcttggattattcaaagttttaaattgcaataatcttgactatttttctgtttatcaa-ttgtttttctcag
|| ||||| |||| ||||||||| |||||||||||||||||||||||| |||| ||||||||||| |||||| | |||||||| ||||| ||||| ||      | |      |  | |      |||   ||| |  |    ||   |||| ||||  || ||| | | ||    |||
GTCACTACAATGTATCATTTGGATCGCCCTATGTACTTGTTGGGATATATTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTGAAgtatgt------tttctcgaaaacaatgcttcctttcctttgtagca--tctgttaatttctctgactaacaaatagcttggtacag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G095348_T01 (Zea mays), 5'ss of exon 16
GTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaacttctgcttggattattcaaagttttaaattgcaataatc-ttgactatttttctgtttatcaatt--gtttttctcag
|| ||||| |||| ||||||||| |||||||||||| | |||||||||||||| ||||||||||| |||||| | |||||||| ||||||||||  |       | |   |  |  | |      |||   ||| || |     ||   |||| | ||  || ||  |  | ||    |||
GTCACTACAATGTATCATTTGGATCGCCCTATGTACCTATTGGGATATCTTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTTAAgtgcgc------tttctctaaaacaatgtttcctttcttttgtaacatctgctgttaatttctgtgactaacatataagcttgatacag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G086015_T01 (Zea mays), 5'ss of exon 1
--------GTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaacttctgcttggattattcaaagttttaaattgcaataatcttgactatttttctgtttatcaatt-gtttttctcag
        || ||||| |||| ||||||||| |||||||||||| ||||||||||| |||| ||||||||||| |||||| | |||||||| ||||| ||||| ||      | |      |  | |      |||   ||| |  |    ||   |||| ||||  || ||| | | ||    |||
ACTTACAGGTCACTACAATGTATCATTTGGATCGCCCTATGTACCTGTTGGGATATATTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTGAAgtatgt------tttctcgaaaacaatgcttcctttcctttgtagca--tctgttaatttctctgactaacaaatagcttggtacag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 17
GTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaacttctgcttggattattcaaagttttaaattgcaataatcttgactatttttctgtttatcaattgtttttctcag
|| ||||| |||||||| ||||| || |||||||| || || ||||||||||| |||||||||||||| ||| | |||||||| || ||||||||||    | | | || |   |  |||  |  ||    || || | || |    |    || ||   |  | || ||| |  |||
GTTACTACAATGTTTCACTTGGATCGGCCTATGTATTTATTAGGATATCTTGCTAACCAAAGTCGTGTATATCTTATTGACAAGGAATTTAAgtaagcagca-tgcagcatacctacttctgatcttc---ttaca-tgatgtgtttttgggttatgacaacaatttttttattacag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G448913_T01 (Zea mays), 5'ss of exon 5
GTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaacttctgcttggattattcaaagttttaaattgcaataatcttgactatttttctgtttatcaa-ttgtttttctcag
                     || |||||||||||| ||||||||||| |||| ||||||||||| |||||| | |||||||| ||||| ||||| ||      | |      |  | |      |||   ||| |  |    | |  |||| ||||  || ||| | | ||    |||
---------------------GATCGCCCTATGTACCTGTTGGGATATATTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTGAAgtatgt------tttctcgaaaacaatgcttcctttcctttgtagcatctatta--atttctctgactaacaaatagcttggtacag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G141587_T05 (Zea mays), 5'ss of exon 16
---GTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaacttc-tgcttggatt--attcaaagttttaaattgcaataatcttgactatttttctgtttatcaattgtttttctcag
   || || ||  ||||||| ||||| || || ||||| || || |||||||||||||||||||| ||||| ||| | ||||| ||  | ||||||| |||  | |||  |   |  |||  | |   ||||||      |||      || ||| | | |   |||| | |||          
CAGGTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATATCTTGCAAACCAAAGCCGTGTCTATCTTATTGATAAGCAATTTAAgtgagttcatctttgttactaaattccacttgtagtttttgtacacaagttctgtggctaatgtacc--ttatta-ttgcag-------

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G141587_T02 (Zea mays), 5'ss of exon 16
GTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaacttc-tgcttggatt--attcaaagttttaaattgcaataatcttgactatttttctgtttatcaattgtttttctcag
|| || ||  ||||||| ||||| || || ||||| || || |||||||||||||||||||| ||||| ||| | ||||| ||  | ||||||| |||  | |||  |   |  |||  | |   ||||||      |||      || ||| | | |   |||| | |||          
GTCACAACTTTGTTTCACTTGGATCGGCCAATGTATTTATTAGGATATCTTGCAAACCAAAGCCGTGTCTATCTTATTGATAAGCAATTTAAgtgagttcatctttgttactaaattccacttgtagtttttgtacacaagttctgtggctaatgtacc--ttatta-ttgcag-------

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 16
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 20
GTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaacttctgcttggattattcaaagttttaaattgcaataatcttgactatttttctgtttatcaattgtttttctcag
|||||||| |||| |||| ||||||| ||||||||||||||||| ||||| || || |||||  | ||||||||||||||||||||||| |||||||   |  || | ||   || |||   |    |   ||| ||    ||    | | | ||   ||    |||           
GTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAAgtaagcagatgttttactgttatgattgctaacaatgttttgtaacttactgacttctgtgtccactttatgattacag-------

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 16
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 16
GTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaacttctgcttggattattcaaa---gttttaaattgca---ataatct--tgac-tatttttctgtttatcaattgtttttctcag
||||| || |||| ||||||||||||||| ||||| ||||| || ||| |||| |||||||| || ||||| ||| | |||||||| || ||||| ||    |||    |  | |||||  |    ||||||  |||||   ||||| |  | || |||||  || ||| |      |         
GTAACCACAATGTATCATTTGGACCGCCCAATGTATTTGTTAGGCTATATTGCCAACCAAAGCCGGGTTTACTTGGTAGACAAAGAATTCAAgtacgttc--ctttatatatgtttatttgagactgttttatcttgcatacataatttgctaacatatttccctttttcttgggaatgcag-----

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 16
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 16
GTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaacttctgcttggattattcaaagttttaaattgcaataatcttgactatttttctgtttatcaattgtttttctcag----
||||| || |||| ||||||||||||||| ||||| |||||||||||||||||||  |||||||| ||||  ||| | |||||||| || |||||||||   |||    |||  |  ||  |   || | ||||      ||| ||   || |  || |  ||   ||||||    |     
GTAACCACAATGTATCATTTGGACCGCCCAATGTATTTGTTGGGATATCTTGCAAGTCAAAGTCGGGTTTTCTTGGTAGACAAAGAATTCAAgtaagtg---cttagatttgtgtgtttatataattgagattgt-----tctagaagtttctgatgctgttcccctgttttgtggatgcag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 16
GTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaacttctgcttggattattcaaagttttaaattgcaataatcttgactatttttctgtttatcaattgtttttctcag----------
||||| || ||||||||||||||||| |||||||| |||||||||||||| || || ||||| || || ||| | || ||||||||||| |||| |||| | ||| ||   | |  |     |||      | |   |  | |||   |  | | | ||  | | ||| ||||  |            
GTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAAgtgagtgga-cttttggcagaa--agggggagtggagggtggttgttgtattgctaacatctttattattaagttggtttttccttttcaatgcag

upper sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 16
GTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaacttctgcttggattattcaaagttttaaattgcaataatcttgactatttttctg--tttatcaat--tgtttttctcag
||||| || |||||||| |||||||| |||||||| ||||| ||||||||||| |  |||||||| |||||| | || |||||||||||||||| || ||   |      || | |  |  ||   |   | |||  |  |  |    |||  |||   |||||  ||  | | ||   |||
GTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAgtgagggagcttgggagctgcacttctgcaa---tctgactgcttttgttcttgtaattgatctaaatttatttatgttatcttatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208274876|gb|GE068494.1|GE068494
EST:     GATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAAGTTTAA                         TGTTATGGGATACACACTGCTTTTAAGCTTGATTGAGTACAAGACACTTG
genomic: GATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAG-AGTTTAAgtaagtgaaa ... tttttctcagTGTTATGGGATACACACTGCTTTTAAGCTTGATTGAGTACAAGACACTTG
EST: gi|208327786|gb|GE124604.1|GE124604
EST:     AAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA                         TGTTATGGGATACACACTGCTTTTAAGCTTGATTGAGTACAAGACACTTGT
genomic: AAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaa ... tttttctcagTGTTATGGGATACACACTGCTTTTAAGCTTGATTGAGTACAAGACACTTGT