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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTATTCCGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCGCAGgtttgaatttcaagtgctaaagtgactggatctatctaaaaattgttatttattcttatcatgaaatgattttcag

Basic information

species Glycine max
transcript GLYMA14G37510.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 16
CATTATTCCGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCGCAGgtttg-aatttcaagtgctaaagtgactggatctatctaaaaattgttatttattcttatcatgaaatgattttcag--
|||||||| ||||||||||| ||||| ||||||||||| ||||| |||||||| || || ||||||||   | |  |||  ||   |      || |||||     ||||| | | |  |||| |  || |   || ||   
CATTATTCAGAGTTGCCTGATATCAAGCGTGTCATTGTAAATACTCATGCCATTGAGCCCCAGgtttgtggtgttcagt--tatgttcttgaaatgtatctg----ttgttttct-tgtttattaacaacttccttgcacag

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 6
CATTATTCCGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCGCAGgtttg--aatttcaagtgcta--aagtgactggatctatctaaaaattgttatttattcttatcatgaaatgattttcag--------------------
||||| || ||||||||||| ||||| |||| |||||| ||||| |||| ||| ||||| ||||||||   | ||||  |  |   |  |  ||   | ||| |        |||   | |    |    | |   || |                       
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttatttttagatatctttttttatgttttgcccattaaaaacttccttggacagacacttgttgagttctttggaacattgtcga

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 5
CATTATTCCGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCGCAGgtttg--aatttcaagtgctaaagtgactggatctatctaaaaattgttatttattcttatcatgaaatgattttcag
||||| || ||||||||||| ||||| |||| |||||| ||||| |||| ||| ||||| ||||||||   | ||||  |  |        |   | | |  |    |||    |||      || |   |          
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttattttcagatatcttttttttaatgttttgcccattaacaacttccttggacag-------

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 18
CATTATTCCGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCGCAGgtttgaatttcaagtgctaaagtgactggatctatctaaaaattgttatttattcttatcatgaaatgattttcag
|||||| | || ||||| || |||||||||||||||||||| ||||||||||| || || |||||| ||   ||||    | |  | ||| | ||||| | ||  | ||  ||| |||| |  ||    |   ||||||
CATTATACTGAATTGCCCGATATCAAACGTGTCATTGTGAACACACATGCCATTGAGCCACAGgttagatgctcaaagtgttacataacttgttctatttgaatgtagtatttttttctaactatatggtatatttcag