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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATTTCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAAACTCAAGCATGTCGATATTCATTAAAAgttagtttgaatatttttttctaagtttcattgctggagtcaggataaatcctttcaattagatgtgtcattattcttgagcttgtctatacttgagtca...

Basic information

species Glycine max
transcript GLYMA14G16040.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G16040.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv04s0008g04890.t01 (Vitis vinifera), 5'ss of exon 17
GAGATTTCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAAACTCAAGCATGTCGATATTCATTAAAAgttagt------ttgaatatttttttctaagtttcattgctggagtcaggataaatcctttcaattagatgtgtcattattcttgagcttgtctatacttgagtca
|||||||||||||||||  || || || || || |||||||||||||| ||||| || ||||| || ||||| || ||||| |||||  |||||||| | ||||||      || ||| |  || |  || ||          | |  | | |||| | | |||  | | |||||||| || ||   |      | |         
GAGATTTCAACCTCGTCATGGAAGATATCTTGCAGCAGCTGCAGAGAACGTTGTATCGATACTGGACGTGGAGACACAAGCTTGTCGGCATTCATTACAGgttagtatatttttcaatgtcattatacaatttaaccaaggacaatatgaaaaaatgcctacaaagaaa-gtgtcattcttttttcacagagaaaaaaaaa-----

upper sequence: GLYMA14G16040.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv04s0008g04910.t01 (Vitis vinifera), 5'ss of exon 7
GAGATTTCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAAACTCAAGCATGTCGATATTCATTAAAAgttagt------ttgaatatttttttctaagtttcattgctggagtcaggataaatcctttcaattagatgtgtcattattcttgagcttgtctatacttgagtca
 ||||||||||||||||  || || || || || |||||||||||||| ||||| || ||||| |||||||| || ||||| |||||  |||||||| | ||||||      || ||| |  || |  || ||          | |  ||| |||| | |  ||  | | |||||||| || ||          | |   |     
TAGATTTCAACCTCGTCATGGAAGATATCTTGCAGCAGCTGCAGAGAACGTTGTATCAATACTGGATGTGGAGACACAAGCTTGTCGGCATTCATTACAGgttagtatatttttcaatgtcattatacaatttaaccaaggacaatatggaaaaatgcctataaagaaa-gtgtcattcttttttcagagaaaaaaaaagg-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192318709|gb|FK011407.1|FK011407
EST:     TTGTTTCTATACTTGATGTGGAAACTCAAGCATGTCGATATTCATTAAAA                         G-ACATACAAAATCGATACATTCTGTGTGTTGGGATCCTTCTGGGGAGTTT
genomic: TTGTTTCTATACTTGATGTGGAAACTCAAGCATGTCGATATTCATTAAAAgttagtttga ... acatgattagGGACATACAAAATCGATACATTCTGTGTGTTGGGATCCTTCTGGGGAGTTT
EST: gi|20814668|gb|BQ299146.1|BQ299146
EST:     TTGTTTCTATACTTGATGTGGAAACTCAAGCATGTCGATATTCATTAAAA                         GGACATACAAAATCGATACATTCTGTGTGTTGGGATCCTTCTGGGGAGTTT
genomic: TTGTTTCTATACTTGATGTGGAAACTCAAGCATGTCGATATTCATTAAAAgttagtttga ... acatgattagGGACATACAAAATCGATACATTCTGTGTGTTGGGATCCTTCTGGGGAGTTT