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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCCAAAATTGAGCGTATCCTTAGGGTTGAAATGTCGCCTCTTCAGAAACAgtaagtgcaattttagttctgaaatttttttcttttggaaaaatactattatcgtaagttcattttctaaattcctgttgatgtattcctttgtgtag

Basic information

species Glycine max
transcript GLYMA14G03780.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03780.1 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os07g46590.1 (Oryza sativa), 5'ss of exon 5
GACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCCAAAATTGAGCGTATCCTTAGGGTTGAAATGTCGCCTCTTCAGAAACAgtaagtgcaattttagttctgaaatttttttcttttggaaaaatactattatcgtaagttcatttt--ctaaattcctgttgatgtattcctttgtgtag
| ||||| || ||  || ||||||| ||||||||||||||||| ||||| || ||||||||||| || ||| | ||||| ||||| ||||| ||||| |||||| | |  || || |  || || ||| |  |  |   |    |  |||    |||  |||||||  |||| |   | ||                   
GGCCTCATATTCTAAGACGAGTTATAAAAGATGTGGAGAAATCTTTACCTCCGAAAATTGAGCGGATTCTTCGTGTTGATATGTCTCCTCTACAGAAGCAgtaaatact-ttgtactaatgtaagtttatgttccttttatt-catcattgagataaaatcatttttcctaattaattattag-----------------

upper sequence: GLYMA14G03780.1 (Glycine max), 5'ss of exon 16
lower sequence: AT2G13370.1 (Arabidopsis thaliana), 5'ss of exon 17
GACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCCAAAATTGAGCGTATCCTTAGGGTTGAAATGTCGCCTCTTCAGAAACAgtaagtgcaattttagttctgaaatttttttcttttggaaaaatactattatcgtaagtt-cattttctaaattcctgttgatgtattcctttgtgtag
|||| || || || ||| |||| || |||||||| || || || || || || ||||| |||||||| || || ||||| ||||| |||||||||||||||||||   || || ||  |||| | ||||      |||| |  |   | ||| || | ||  ||| | |   |   ||||                   
GACCCCATATTCTACGACGAGTGATTAAAGATGTTGAAAAGTCGTTGCCTCCAAAAATCGAGCGTATACTAAGAGTTGAGATGTCCCCTCTTCAGAAACAgtaagcataacttcag--ctgatacttttgag---tggatagctttaaatattgttacttatattctgttgttctgtgttag-----------------

upper sequence: GLYMA14G03780.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 16
GACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCCAAAATTGAGCGTATCCTTAGGGTTGAAATGTCGCCTCTTCAGAAACAgtaagtgcaattttagttctgaaatttttttcttttggaaaaatactattatcg--taagttcattttctaaattcctgttgatgtattcctttgtgtag
| || || || ||||||||||||||||| ||||| ||||| || || || || |||||||| ||||| ||||||||||||||||| |||||||| ||||||| |||   ||  |     || |            || |  | ||  |||   |  ||  |   ||||||  ||||        ||| |    |   |||
GGCCCCATATTCTTCGAAGAGTTATCAAGGATGTAGAGAAGTCTTTGCCTCCAAAAATTGAACGTATTCTTAGGGTTGAAATGTCCCCTCTTCAAAAACAgttagtattatccttaacttgta------------tgaagtagtatcatttctggttatatcagttttctctattctcacctg-gtacttacattcatag

upper sequence: GLYMA14G03780.1 (Glycine max), 5'ss of exon 16
lower sequence: PP1S93_123V6.1 (Physcomitrella patens), 5'ss of exon 17
GACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCCAAAATTGAGCGTATCCTTAGGGTTGAAATGTCGCCTCTTCAGAAACAgtaagtgcaattttagttctgaaatttttttcttttggaaaaatactattatcgt-aagttcattttctaa-attcctgttgatgtattccttt-gtgtag-----------------------------------------------
|||||||| |  | || ||||| || ||||||||||| |||||||| || |||||||||||||| ||  | || || ||||||||||||||||| || |||| |||   || ||| |  |   |  |||  |  |   ||   |   |  ||| | ||  |||||   |   |    ||||  |||    | || || ||                                                
GACCTCACTTGTTGCGGAGAGTAATTAAAGATGTGGAAAAATCATTGCCACCCAAAATTGAGCGCATTTTGAGAGTGGAAATGTCGCCTCTTCAAAAGCAgtgagtttcatgttactaatcttacgtttagcagtacaaagcgtggaaa-atcatgaaaatcattgcttgccagcaatgtttgtgtggaacgttagtatataaatactgagaaatatatctaacatctaccatttttatgttttcaag