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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAAAACAGATTTGATATAAAAAAAATTGTGAGCGAGAACTGGATTGAACCACCAAAAAGGGAGCGGAAACGCAAgtaagtgttgccctttaccttttatacattcatattgatttggtattttgttcttttgacaagatgtgatgcttttctttttctggggttcttgctcatag

Basic information

species Glycine max
transcript GLYMA13G28720.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 16
GATGAAAACAGATTTGATATAAAAAAAATTGTGAGCGAGAACTGGATTGAACCACCAAAAAGGGAGCGGAAACGCAAgtaagtgttgccctttaccttttatacattcatattgatttggtattttgttcttttgac-aagatgtgatgcttttctttttctggggttcttgctcatag
||||| ||||  |||||  | || |||||||| || || ||||||||||| ||||||||||| |||||||| || |||||| |||     || |  |   | || |   |  | ||||  | ||||    | |     ||||  ||    ||| | |||||| |   | |   |     
GATGAGAACAAGTTTGACTTCAAGAAAATTGTCAGTGAAAACTGGATTGAGCCACCAAAAAGAGAGCGGAAGCGGAAgtaattgtgaattttcagttgcca-acttatgttataattttatgtttttcattatcatttaagacatg----tttccattttcttgtcctttaagtag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208314953|gb|GE115717.1|GE115717
EST:     CGAGAACTGGATTGAACCACCAAAAAGGGAGCGGAAACGCAA                         TTACTCGGAGTCTGAATACTTCAAGCGAACAATGCGCCAAGGTGGTCCTAC
genomic: CGAGAACTGGATTGAACCACCAAAAAGGGAGCGGAAACGCAAgtaagtgttg ... ttgctcatagTTACTCGGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGTCCTAC
EST: gi|254331883|gb|GR846193.1|GR846193
EST:     NTTGTGAGCGAGAACTGGATTGAACCACCAAAAAGGGAGCGGAAACGCAA                         TTACTCGGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGTCCTAC
genomic: ATTGTGAGCGAGAACTGGATTGAACCACCAAAAAGGGAGCGGAAACGCAAgtaagtgttg ... ttgctcatagTTACTCGGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGTCCTAC