Sequence
atgc intronic sequence ATGC exonic sequenceGAATAGGTTCTTAGCTGCTGGTGATGAGTTTATGATCAAATTCTGGGACATGGATAATACAAACATGTTGACAAGTGTTGAGGCAGATGGTGGATTACTGgtaattactgggttgacattgtgttttatttatctgatgataatttcattatgatgtagtaatacatgtctataaaatctgcag
Basic information
species | Glycine max |
transcript | GLYMA13G22720.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G22720.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv11s0016g05620.t01 (Vitis vinifera), 5'ss of exon 16
GAATAGGTTCTTAGCTGCTGGTGATGAGTTTATGATCAAATTCTGGGACATGGATAATACAAACATGTTGACAAGTGTTGAGGCAGATGGTGGATTACTGgtaattactgggttgaca---ttgtgtttta-tttatctgatgataatttcattatgatgtagtaatacatgtctataaaatctgcag
||| | || || ||||||||||||||||| || ||||||| ||||||||||| ||| ||| | |||| | ||| ||||| |||||||| | |||| || | | ||| | || | || || |||||||| || | || | || | | || | || |||||||
AAATCGATTTTTGGCTGCTGGTGATGAGTTCCTGGTCAAATTTTGGGACATGGACAATGTTAACCTTTTGATGACAACTGATGCAGAGGGTGGATTGCCGgta-ttgttagattggtaaaattccatgctaacttttctgatgaaccctttttgtaaattgattattccttgcattaaatgtctgcag
upper sequence: GLYMA13G22720.1 (Glycine max), 5'ss of exon 16
lower sequence: PP1S99_260V6.1 (Physcomitrella patens), 5'ss of exon 15
GAATAGGTTCTTAGCTGCTGGTGATGAGTTTATGATCAAATTCTGGGACATGGATAATACAAACATGTTGACAAGTGTTGAGGCAGATGGTGGATTACTGgtaattactgggt-tgacattgtgttt-tatttatctgatgataatttcattatgatgtagt---aatacatgtctataaaatctgcag---------
||| | ||||| ||||||||||| || || ||||||| ||||||||||||||||| || ||| || | |||| |||| || || || || || | ||| | || || | ||| | ||| || || | | | | ||| | || | | | || | | | || |
CAATCGTTTCTTGGCTGCTGGTGACGAATTCTTGATCAAGTTCTGGGACATGGATAACACGAACTTGCTAACAACAATTGATGCTGAAGGCGGCTTGCCGgtgagtagtgattgtgaaaatgtcttcatagattttgaagtagaatcaggcttgtatttgatctgagtatgagctgacattcccttcctgtgatgcag
upper sequence: GLYMA13G22720.1 (Glycine max), 5'ss of exon 16
lower sequence: PP1S316_34V6.1 (Physcomitrella patens), 5'ss of exon 15
GAATAGGTTCTTAGCTGCTGGTGATGAGTTTATGATCAAATTCTGGGACATGGATAATACAAACATGTTGACAAGTGTTGAGGCAGATGGTGGATTACTGgtaattactgggttgacattgt-gttttattta------tctg-atgataatttcattatgatgtagtaat--acatgtctataaaatctgcag------
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AAATCGTTTCCTAGCTGCTGGTGACGAATTTCTGATCAAGTTCTGGGACATGGATAATACGAACTTGCTTACTACAATTGATGCAGAGGGTGGCTTGCCGgtgagtactgactgaataataccgtcttattaaaagcgacatgtgtgaagaaggtacttaaaagttgcaattgagacttctagctgactggcactctggcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18038710|gb|BM307004.1|BM307004EST: GGATAATACAAACATGTTGACAAGTGTTGAGGCAGATGGTGGATTACTG GCTTCTCCCTGTATTAGATTTAACAAGGATGGAATACTGTTGGCTGTCTCC
genomic: GGATAATACAAACATGTTGACAAGTGTTGAGGCAGATGGTGGATTACTGgtaattactg ... aaatctgcagGCTTCTCCCTGTATTAGATTTAACAAGGATGGAATACTGTTGGCTGTCTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATAGGTTCTTAGCTGCTGGTGATGAGTTTATGATCAAATTCTGGGACATGGATAATACAAACATGTTGACAAGTGTTGAGGCAGATGGTGGATTACTGgtaattactgggttgacattgtgttttatttatctgatgataatttcattatgatgtagtaatacatgtctataaaatctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA