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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGCTGATATTTATACATCTAGGGTGTCAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAGgtattcagatgagtgttttttaatcatataaagcattaggttattgttttgactttaaactgacttagatatgcttctttgtgctctgcag

Basic information

species Glycine max
transcript GLYMA13G17950.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17950.1 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os01g14810.2 (Oryza sativa), 5'ss of exon 17
ATATGCTGATATTTATACATCTAGGGTGTCAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAGgtattcaga------tgagtgttttttaatcatataaagcattaggttattgttttgac--tttaaactgacttagatatgct-tctttgtgctctgcag
|||||||||||| || ||||| ||||| ||||||||| |  ||||||| || |||||||||||||  || || ||||||||| |   |      |   || ||| |   | | | |     ||  || || |  |     |||  ||||| | |||  || | | | |||   ||  | 
ATATGCTGATATATACACATCAAGGGTTTCAAATTTTCTACATTATACTCCATTCATGTATTTCCAATCACAAGAACAGgtaattgcaaaactctagatgatttatttcccttttaccttctacatttttatcatagtcatttcgactgattgagacctgatatttctgtttccttaaa

upper sequence: GLYMA13G17950.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G044819_T02 (Zea mays), 5'ss of exon 15
ATATGCTGATATTTATACATCTAGGGTGTCAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAGgtattcagatgagt--gttttttaatcatataaagcattaggttattgttttgactttaaact--gacttagatatgc---ttctttgtgctctgcag--
|||||||||||| || ||||| ||||| ||||||||| || | ||||| || |||||||||||||  ||||| |||||||||   | |    |   |  | |  | |  |   |||||  | ||||||| ||  | |    |  || | |   ||||   || | |   |  || ||  
ATATGCTGATATATACACATCAAGGGTTTCAAATTTTCTGCACTATACTCCATTCATGTATTTCCAATCTCAAGAACAGgtaaatacacagctccatactctgcttacctttggcattttgctattgttgtgtttattggtttagattcaagaatgccaattttcttaacaatgaagac

upper sequence: GLYMA13G17950.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv05s0020g00880.t01 (Vitis vinifera), 5'ss of exon 16
ATATGCTGATATTTATACATCTAGGGTGTCAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAGgtattcagatgagtgt----tttttaatcatataaagcattaggttattgttttgactttaa-actgacttagatatgcttctttgtgctctgcag----
 |||||||||||||| || |||||||| ||||||||  |  ||||||||||||| |||||||| | ||| ||||||||||||||||||  | | |    || |  |||||||      |   ||| ||      | | ||   |  |  ||| || |   |     |  |    |    
GTATGCTGATATTTACACCTCTAGGGTCTCAAATTTCCTACATTATACACCCTTTATGTATTTTCACTCACAGGAACAGgtattcagagtattatggctttctgcatcatattttctgtcttgtttttacccccattatattgcataaataggtaggtcacgacaaggacaaagggcgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23735341|gb|BU765945.1|BU765945
EST:     CAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAG                         AACCTAGCGCATGACTCATACACATACTATTGTTCACAACTCTATAATGAG
genomic: CAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAGgtattcagat ... tgctctgcagAACCTAGCGCATGACTCATACACATACTATTGTTCACAACTCTATAATGAG
EST: gi|9564227|gb|BE473736.1|BE473736
EST:     CAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAG                         AACCTAGCGCATGACTCATACACATACTATTGTTCACAACTCTATAATGAG
genomic: CAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAGgtattcagat ... tgctctgcagAACCTAGCGCATGACTCATACACATACTATTGTTCACAACTCTATAATGAG
EST: gi|213606425|gb|DB976530.1|DB976530
EST:     CAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAG                         AACCTAGCGCATGACTCATACACATACTATTGTTCACAACTCTATAATGAG
genomic: CAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAGgtattcagat ... tgctctgcagAACCTAGCGCATGACTCATACACATACTATTGTTCACAACTCTATAATGAG
EST: gi|214007914|gb|DB986475.1|DB986475
EST:     CAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAG                         AACCTAGCGCATGACTCATACACATACTATTGTTCACAACTCTATAATGAG
genomic: CAAATTTTTTGTATTATACACCCTTCATGTATTTCCGCTCTCAGGAACAGgtattcagat ... tgctctgcagAACCTAGCGCATGACTCATACACATACTATTGTTCACAACTCTATAATGAG