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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTTAGAGAAAGTATGTAAGGATCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATGgtattatcttacagagcaatcttttatggcattatagacagcatgtaaattagttatgacctctttggtaaatataataataatctctgttattttcctattcaatttgtag

Basic information

species Glycine max
transcript GLYMA13G17610.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17610.1 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os07g37750.1 (Oryza sativa), 5'ss of exon 13
GATGTTAGAGAAAGTATGTAAGGATCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATGgtattatcttacagagcaatcttttatggcattataga--cagcatgtaaattagttatgacctctttggtaaatataataataatctctgttattttcctattcaatttgtag
|||| | |||||||| || |||||| |||| |||||||  ||||| ||||| |||||||||||||| |||||||  |||||| | |||||||| |||||        |||  | | | | || |  || || | |   || || |    ||  |||  || | | | || || | ||   ||  | | | | | ||               
GATGCTGGAGAAAGTCTGCAAGGATTCACAAATGCTTGCAGACATGTTTGTAAATTATGATTGTGACCTTGAGGGGCCAAACCTTTTTGAACGCATGgtgag----cacaatgaattttatttttacactagaaaactagtatctcttctaactatctccacat-gatatatctgattg-aacatgtatcactatcag-------------

upper sequence: GLYMA13G17610.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G335287_T01 (Zea mays), 5'ss of exon 14
GATGTTAGAGAAAGTATGTAAGGATCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATGgtatta-----tcttacagagcaatcttttatggcattatagacagcatgtaaattagttatgacctctttggtaaatataataataatctctgttattttcctattcaatttgtag
|||||| |||||||| || || ||||| || |||||||  ||  | |||||||| ||||| ||||||||||||| ||||||  | |||||||| | |||| |      | ||| |   | |      || || || |  |   |   |||| | ||  |    |||||||    |  || |    |  ||| || | |    | | |   |   
GATGTTGGAGAAAGTTTGCAAAGATCCCCAAATGCTTGCAGATGTGTTTGTGAACTATGACTGTGATCTTGAGGGACCAAATCTTTTTGAACGCACGgtaatcatattttttaaatgtccagaaaacatagc-ttctgaatttctcataaaat-gtgtttttttctttggct--tgcaacacatctgactgataatctatc-tcctaccag---

upper sequence: GLYMA13G17610.1 (Glycine max), 5'ss of exon 16
lower sequence: AT3G43300.2 (Arabidopsis thaliana), 5'ss of exon 15
GATGTTAGAGAAAGTATGTAAGGATCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATGgtattatcttacagagcaatcttttatggcattatagacagcatgtaaattagttatgacctctttggtaaatataa-taataatctctgttattttcctattcaatttgtag
|||| | |||||||| || || ||||| ||||||||||||||  | | ||| || |||||||||||||| ||||| |||||||||||||| || ||||| |      |     || ||||||||   | ||         ||||  | ||  |||   |   |||||  ||| | | | | |   |||| || |  || |  |       
GATGCTTGAGAAAGTCTGCAAAGATCCTCAGATGCTTGTTGATGTGTATGTAAACTATGATTGTGATCTAGAGGCCCCAAACTTGTTTGAGCGCATGgtgt-gctccattttccattcttttatataactac--------tgtacttcagcaatg---tgactggtagttatgactcacattacatgtttttattttactttag------

upper sequence: GLYMA13G17610.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 16
GATGTTAGAGAAAGTATGTAAGGATCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATGgtattatcttacagagcaatcttttatggcattatagacagcatgtaaattagttatgacctctttggtaaatataataataatctctgttattttcctattcaatttgtag
|||| | |||||||| ||||| ||||| ||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||||| || ||||||| |||| ||| |  | |   ||||    || ||             |  | |     ||||| | || || | | |  ||||  | ||   ||| ||| || || |   
GATGCTTGAGAAAGTTTGTAAAGATCCCCAGATGCTTGTTGACATATATGTGAACTATGATTGTGATCTTGAGGCCCCAAACTTGTTTGAGCGCATGgtataatctaacatattattgcattataatgtt-tatttgttgataggttctgcttgattctcttggatatatctcaaacgaatccattttgccttcttat-catttag---

upper sequence: GLYMA13G17610.1 (Glycine max), 5'ss of exon 16
lower sequence: PP1S382_36V6.1 (Physcomitrella patens), 5'ss of exon 7
GATGTTAGAGAAAGTATGTAAGGATCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATGgtattatcttacagagcaatcttttatggcattatagacagcatgtaaattagttatgacctctttggtaaatataataataatctctgttattttcctattcaatttgtag
|||| | ||||| |  || || ||||| |||||||| |  ||||| |||||||| || ||||||||||| || ||  | |||||||||||||| |||||||       |  | ||   |   |  |||   | |   |  | |      || |      | |  |   || |  | ||     |||  || ||   |  | |       
GATGCTGGAGAAGGCTTGCAACGATCCGCAGATGCTGGCAGACATTTTTGTGAACTACGATTGTGATCTGGACGCTACGAACTTGTTTGAACGCATGgtatggagc--cgaaacatggtgcaagtgcacgtttgtttg-gtctgggacggtcagtggtgcgtgag--gatgtggtgatg----ctgacatgttgacaagcgagaat---