1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GATTTGGATGCTGTTGAGGCGCTTATTCAAGGTCTTGTGCTGTTCCAAGGAGGCATTCTCATGgtatgttattctttcaatattatttgatttgagtgccccaaaacaatctttttatacatccgaattgattgatgtttatgctctggcag
species | Glycine max |
transcript | GLYMA13G10530.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TTGAGGCGCTTATTCAAGGTCTTGTGCTGTTCCAAGGAGGCATTCTCATG GTGAGTCACGATGAGCACCTCATCTCTGGAAGCGTGGAGGAACTATGGGTTEST: gi|58024671|gb|CX711412.1|CX711412
genomic: TTGAGGCGCTTATTCAAGGTCTTGTGCTGTTCCAAGGAGGCATTCTCATGgtatgttatt ... gctctggcagGTGAGTCACGATGAGCACCTCATCTCTGGAAGCGTGGAGGAACTATGGGTT
EST: TTGAGGCGCTTATTCAAGGTCTTGTGCTGTTCCAAGGAGGCATTCTCATG GTGAGTCACGATGAGCACCTCATCTCTGGAAGCGTGGAGGAACTATGGGTTEST: gi|57576024|gb|CX548995.1|CX548995
genomic: TTGAGGCGCTTATTCAAGGTCTTGTGCTGTTCCAAGGAGGCATTCTCATGgtatgttatt ... gctctggcagGTGAGTCACGATGAGCACCTCATCTCTGGAAGCGTGGAGGAACTATGGGTT
EST: TTGAGGCGCTTATTCAAGGTCTTGTGCTGTTCCAAGGAGGCATTCTCATG GTGAGTCACGATGAGCACCTCATCTCTGGAAGCGTGGAGGAACTATGGGTTEST: gi|192303878|gb|FG998230.1|FG998230
genomic: TTGAGGCGCTTATTCAAGGTCTTGTGCTGTTCCAAGGAGGCATTCTCATGgtatgttatt ... gctctggcagGTGAGTCACGATGAGCACCTCATCTCTGGAAGCGTGGAGGAACTATGGGTT
EST: TTGAGGCGCTTATTCAAGGCCTTGTGCTGTTCCAAGGAGGCATTCTCATG GTGAGTCACGATGAGCACCTCATCTCTGGAAGCGTGGAGGAACTATGGGTT
genomic: TTGAGGCGCTTATTCAAGGTCTTGTGCTGTTCCAAGGAGGCATTCTCATGgtatgttatt ... gctctggcagGTGAGTCACGATGAGCACCTCATCTCTGGAAGCGTGGAGGAACTATGGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTTGGATGCTGTTGAGGCGCTTATTCAAGGTCTTGTGCTGTTCCAAGGAGGCATTCTCATGgtatgttattctttcaatattatttgatttgagtgccccaaaacaatctttttatacatccgaattgattgatgtttatgctctggcag
- - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - AAGGAG