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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAAGATGCTGTGTTAACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGTCAAGTTGGCGAAATGCTACGTCTGGCTTATGTCCTGTTTGTAGgtattatcaagctaacccattagaattttcgactcttctatttaatttggactgaaggaagttcaaaattgtctttattgcagtagttttcagatgaatcttggttatggtacaaattcctaacaatattgtttactttacag

Basic information

species Glycine max
transcript GLYMA12G30540.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G30540.1 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os02g32570.1 (Oryza sativa), 5'ss of exon 15
TTGAAGATGCTGTGTTAACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGTCAAGTTGGCGAAATGCTACGTCTGGCTTATGTCCTGTTTGTAGgtattatcaagctaacccattagaattttcgact--cttctatttaatttggactgaaggaagttcaaaatt-gtctttattgcagtagttttcagatgaatcttggttatggtacaaattcctaacaatattgtttactttacag
|||| |||||||| || || || ||||||||||| |||||||| ||||| |||||||| |||||||| | |||  |  | ||| | |||||||| ||||||||  || | ||| ||   |    ||||    ||   || | |||| || | |      ||  || |   || |  |  | |||   ||                                                         
TTGAGGATGCTGTATTGACTCCCTGTGCTCACCGTTTATGCCGAGAATGTCTCTTGTCTAGTTGGCGGAGTGCATCAGCAGGCCTTTGTCCTGTCTGTAGgtag-attatgctcactgttccttatttatctctgaattttgtttacttggtatattctgatctttatcttttgattccactgctacag---------------------------------------------------------

upper sequence: GLYMA12G30540.1 (Glycine max), 5'ss of exon 16
lower sequence: AT5G22750.1 (Arabidopsis thaliana), 5'ss of exon 15
TTGAAGATGCTGTGTTAACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGTCAAGTTGGCGAAATGCTACGTCTGGCTTATGTCCTGTTTGTAGgtattatcaagctaacccattagaattttcgactcttctatttaatttggactgaaggaagttcaaaattgtctttattgcagtagttttcagatgaatcttggttatggtacaaattcctaacaatattgtttactttacag
|||| |||||||| |||||||| ||||||||  | ||||| || || || |||||| |||||||| ||||| |||| ||||| ||||||||||| |||||||||  | ||| |   ||  |   |||      | |  | | |  || |     || ||   ||  | |    | || |   | |  |     ||||    | ||| |  | ||                             
TTGAGGATGCTGTATTAACGCCATGTGCTCATAGATTATGTCGTGAGTGTCTCTTGGCAAGTTGGAGAAATTCTACTTCTGGGTTATGTCCTGTGTGTAGgtatcttgaagttgttcc--tgcgattactagttttcttctgttgtt-gattccaatgagtgtctgagtaaggtctaatttggcaaataatgaatgatgaatcgttttt-ttcag----------------------------

upper sequence: GLYMA12G30540.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv06s0061g01190.t01 (Vitis vinifera), 5'ss of exon 15
TTGAAGATGCTGTGTTAACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGTCAAGTTGGCGAAATGCTACGTCTGGCTTATGTCCTGTTTGTAGgtattatcaagctaac-ccattagaattttcgact--cttctatttaatttggactgaaggaagttcaaaattgtctttattgcagtagttttcagatgaatcttggttatggtacaaattcctaacaatattgtttactttacag
|||||||||| ||||| || ||||||||||| || |||||||| || || |||||| | |||||||||||| | || ||||| || || ||||||||||||||   |  || |||   || | |  || |    |  ||| || |  ||||    |         | | | ||   |||  |    |  | | |   | |   | |  | |  ||| |  |   ||||  ||   |  ||||||||
TTGAAGATGCAGTGTTGACTCCTTGTGCTCATCGTTTATGCCGAGAGTGTCTCTTGGCTAGTTGGCGAAATCCCACTTCTGGATTTTGCCCTGTTTGTAGgtaccttttagttaatgtcagtggttttattatttggcttttaatgcattttatttttgtactacttatattttatttttgttttttgttgtcctttttataatggagttttatactatctttgaacatgatctctctctttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208230323|gb|GE032148.1|GE032148
EST:     CTCTTGTCAAGTTGGCGAAATGCTACGTCTGGCTTATGTCCTGTTTGTAG                         GAAAACAATCAGCAGGCAGGAT
genomic: CTCTTGTCAAGTTGGCGAAATGCTACGTCTGGCTTATGTCCTGTTTGTAGgtattatcaa ... tactttacagGAAAACAATCAGCAGGCAGGAT
EST: gi|193512355|gb|FK468993.1|FK468993
EST:     CTCTTGTCAAGTTGGCGAAATGCTACGTCTGGCTTATGTCCTGTTTGTAG                         GAAAACAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTT
genomic: CTCTTGTCAAGTTGGCGAAATGCTACGTCTGGCTTATGTCCTGTTTGTAGgtattatcaa ... tactttacagGAAAACAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTT
EST: gi|208104040|gb|GD902225.1|GD902225
EST:     CTCTTGTCAAGTTGGCGAAATGCTACGTCTGGCTTATGTCCTGTTTGTAG                         GAAAACAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTT
genomic: CTCTTGTCAAGTTGGCGAAATGCTACGTCTGGCTTATGTCCTGTTTGTAGgtattatcaa ... tactttacagGAAAACAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTT
EST: gi|7589119|gb|AW704900.1|AW704900
EST:     CTCTTGTCAAGTTGGCGAAATGCTACATCTGGCTTATGTCCTGTTTGTAG                         GAAAACAATCAGCAGGCTGGATCTTATCACTGCCCCTACTGAGAATCGGTT
genomic: CTCTTGTCAAGTTGGCGAAATGCTACGTCTGGCTTATGTCCTGTTTGTAGgtattatcaa ... tactttacagGAAAACAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTT
EST: gi|193324264|gb|FK292628.1|FK292628
EST:     GCTACGTCTGGCTTATGTCCTGTTTGTAG                         GAAAACAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTT
genomic: GCTACGTCTGGCTTATGTCCTGTTTGTAGgtattatcaa ... tactttacagGAAAACAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTT
EST: gi|193666288|gb|FK610597.1|FK610597
EST:     TCCTGTTTGTAG                         GAAAACAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTT
genomic: TCCTGTTTGTAGgtattatcaa ... tactttacagGAAAACAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTT
EST: gi|193358097|gb|FK319697.1|FK319697
EST:     CTCTTGTCAAGTTGGCGAAATGCTACATCTGGCTTATGTCCTGTTTGTAG                         GAAAACAATCAGCAGGCTGGATCTTATCACTGCCCCTACTGAGAATCGGTT
genomic: CTCTTGTCAAGTTGGCGAAATGCTACGTCTGGCTTATGTCCTGTTTGTAGgtattatcaa ... tactttacagGAAAACAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTT
EST: gi|207714815|gb|GD695033.1|GD695033
EST:     CTCTTGTCAAGTTGGCGAAATGCTACATCTGGCTTATGTCCTGTTTGTAG                         GAAAACAATCAGCAGGCTGGATCTTATCACTGCCCCTACTGAGAATCGGTT
genomic: CTCTTGTCAAGTTGGCGAAATGCTACGTCTGGCTTATGTCCTGTTTGTAGgtattatcaa ... tactttacagGAAAACAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTT
EST: gi|207713179|gb|GD697163.1|GD697163
EST:     CTCTTGTCAAGTTGGCGAAACGCTACGTCTGGCTTATGTCCTGTTTGTAG                         GAAAACAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTT
genomic: CTCTTGTCAAGTTGGCGAAATGCTACGTCTGGCTTATGTCCTGTTTGTAGgtattatcaa ... tactttacagGAAAACAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTT
EST: gi|193331193|gb|FK293269.1|FK293269
EST:     TCTTTGTCAAGTTGGCGAAATGCTACGTCTGGCTTATGTCCTGTTTGTAG                         GAAAACAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTT
genomic: TC-TTGTCAAGTTGGCGAAATGCTACGTCTGGCTTATGTCCTGTTTGTAGgtattatcaa ... tactttacagGAAAACAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTT