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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACTATTTCTATTCTTTTGTCAACATATGCTAAAATTCTGATGCACAGTCAACCACCAGACTCTGAATTACAGAATCAGATATGGACAATATTTAAGAAgtgagattttacctctgcaatgttcaatttttattattatgattttttctattgtttttcatgatgccataggttcttctaacccatttgctcatctttag

Basic information

species Glycine max
transcript GLYMA12G30520.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G30520.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 5'ss of exon 16
CTACTATTTCTATTCTTTTGTCAACATATGCTAAAATTCTGATGCACAGTCAACCACCAGACTCTGAATTACAGAATCAGATATGGACAATATTTAAGAAgtgagat-----tttacctctgc-aatgttcaatttttattattatgattttttctattgtttttcatgatgccataggttcttctaacccatttgctcat-ctttag
||||  || |||||||| | |||||||||||||| ||| ||||||||| ||||||  ||||| | ||| ||||||||||||| ||| ||||||| |  |||||||||     || |||  | |  || |  | || || ||||||   |      |  | | |      |     | |  |  | |||| || ||   ||| ||| ||
CTACAGTTCCTATTCTTCTTTCAACATATGCTAAGATTTTGATGCACACTCAACCCTCAGACCCAGAACTACAGAATCAGATTTGGGCAATATTCAGCAAgtgagataaagtttaaccaatactgatttatatttctttttattacactagaagttgatatctcctgaaacattgtggaattctttaacacaattttgcattcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5058266|gb|AI736742.1|AI736742
EST:     CAACCACCAGACTCTGAATTACAGAATCAGATATGGACAATATTTAAGAA                         ATATGAAAGCTCAATTGAAGTCGAAATACAGCAAAGAGCTGTTGAATATTT
genomic: CAACCACCAGACTCTGAATTACAGAATCAGATATGGACAATATTTAAGAAgtgagatttt ... tcatctttagATATGAAAGCTCAATTGAAGTCGAAATACAGCAAAGAGCTGTTGAATATTT