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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAGAGTGTTCGTGTGTATGATTTATTGAAGACCAAGATCATAAAAAAGCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatatggttattgttattatgaaaattatattgtaatctgtttctcttctactcattaatacagaacattattcatcataattgtttcggtacacattgcatgcag

Basic information

species Glycine max
transcript GLYMA12G28910.1
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27427559|gb|CA939079.1|CA939079
EST:     TGAAGCTTCATCCATTGCAGTTCATCCTGGAG                         GTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
genomic: TGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatatggtt ... ttgcatgcagGTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
EST: gi|10231177|gb|BE800124.1|BE800124
EST:     GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAG                         GTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
genomic: GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatatggtt ... ttgcatgcagGTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
EST: gi|6951596|gb|AW423664.1|AW423664
EST:     GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAG                         GTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
genomic: GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatatggtt ... ttgcatgcagGTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
EST: gi|16344829|gb|BI970424.1|BI970424
EST:     GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAG                         GTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
genomic: GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatatggtt ... ttgcatgcagGTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
EST: gi|58016136|gb|CX702878.1|CX702878
EST:     GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAG                         GTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
genomic: GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatatggtt ... ttgcatgcagGTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
EST: gi|58015214|gb|CX701956.1|CX701956
EST:     GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAG                         GTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA
genomic: GCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatatggtt ... ttgcatgcagGTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAAAGAGTGTTCGTGTGTATGATTTATTGAAGACCAAGATCATAAAAAAGCTTGATACTGGGCTTCGTGAAGCTTCATCCATTGCAGTTCATCCTGGAGgtatatggttattgttattatgaaaattatattgtaatctgtttctcttctactcattaatacagaacattattcatcataattgtttcggtacacattgcatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC