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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATATGGTTTTACTGCTGTGGACAGGCCAGAAGGATTCTTGGTTTTGGCCATTGCTTCTCTAGGAAATGAGATTACCGAGTTGAAAACCCCACCTGAGgtatccaaaatgcacttaagtcaccttttcaactttcactcaactaatatatatttgttttcaaaatttttgacacag

Basic information

species Glycine max
transcript GLYMA12G09390.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09390.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv06s0080g00260.t01 (Vitis vinifera), 5'ss of exon 15
AAGATATGGTTTTACTGCTGTGGACAGGCCAGAAGGATTCTTGGTTTTGGCCATTGCTTCTCTAGGAAATGAGATTACCGAGTTGAAAACCCCACCTGAGgtatccaaaatgcact--taagtcaccttttcaac------tttcactcaactaatatatatttg------ttttcaaaatttttgacacag
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TAGATATGGGTTTACAGCTGTGGACAGGCCAGAAGGTTTCTTGGTTTTGGCTGTTGTTTCTCTGGGAGACCAAGTCAATGAGTATAAGAATCCACCTGAGgtatgtgaacttggttgccaagctatagaatgaacgaaatattttgctctccccatggaatcctggaaagccttacaaattaataaaagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51338229|gb|CO982095.1|CO982095
EST:     CCATTGCTTCTCTAGGAAATGAGATTACCGAGTTGAAAACCCCACCTGAG                         GATGCATCATCTTTGGAGGAAAAGAAGGTTGGAGTGAAGGGACCGGGGAAG
genomic: CCATTGCTTCTCTAGGAAATGAGATTACCGAGTTGAAAACCCCACCTGAGgtatccaaaa ... tttgacacagGATGCATCATCTTTGGAGGAAAAGAAGGTTGGAGTGAAGGGACCGGGGAAG
EST: gi|18730596|gb|BM525966.1|BM525966
EST:     CCATTGCTTCTCTAGGAAATGAGATTACCGAGTTGAAAACCCCACCTGAG                         GATGCATCATCTTTGGAGGAAAAGAAGGTTGGAGTGAAGGGACCGGGGAAG
genomic: CCATTGCTTCTCTAGGAAATGAGATTACCGAGTTGAAAACCCCACCTGAGgtatccaaaa ... tttgacacagGATGCATCATCTTTGGAGGAAAAGAAGGTTGGAGTGAAGGGACCGGGGAAG