Sequence
atgc intronic sequence ATGC exonic sequenceTATTGATAGAAAAAAGAATATCTTTAAGTTGTCTCAAGGAGAATATGTTGCTGTGGAGAATATTGAAAACAAATACTTACAGTGCCCCCTTATAACATCGgtatgtttctgcttcaagcatagaacattcagtaaaattagagcaacattaattgcattgcattgcatttgtgttggatgcctagttttgtagggaaagtggacttacaaatagctcaactattaaatttatgtataatattccatatgcag
Basic information
species | Glycine max |
transcript | GLYMA12G05140.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G05140.1 (Glycine max), 5'ss of exon 16
lower sequence: AT1G49430.1 (Arabidopsis thaliana), 5'ss of exon 16
TATTGATAGAAAAAAGAATATCTTTAAGTTGTCTCAAGGAGAATATGTTGCTGTGGAGAATATTGAAAACAAATACTTACAGTGCCCCCTTATAACATCGgtatgtttctgcttcaagcatagaacattcagtaaaattagagcaac--attaattgcattgcattgcatttgtgttggatgcctagttttgtagggaaagtggacttacaaatagctcaactattaaatttatgtataatattccatatgcag
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CATCGATAGGAAGAAGAACATCTTCAAGTTGTCTCAAGGTGAATATGTTGCTGTTGAAAACCTCGAAAACACTTACTCAAGATGTCCCCTCATTGCTCAGgtatgtaattattaaaattatgttttcaatactataatcatagtaattgaataattg--ttatctaataattgtactatctaccaataattgtgacag--------------------------------------------------------
upper sequence: GLYMA12G05140.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv03s0063g01880.t01 (Vitis vinifera), 5'ss of exon 16
TATTGATAGAAAAAAGAATATCTTTAAGTTGTCTCAAGGAGAATATGTTGCTGTGGAGAATATTGAAAACAAATACTTACAGTGCCCCCTTATAACATCGgtatgtt--tctgcttcaagcatagaacattcagtaaaattagagcaacattaattgcattgcattgcatttgtgttggatgcctagttttgtagggaaagtggacttacaaatagctcaactattaaatttatgtataatattccatatgcag
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TATTGACAGGAAAAAGAACATCTTTAAGCTCTCTCAAGGGGAATATGTTGCTGTGGAGAATCTTGAAAACACATATTCAAGATGCCCGCTTATAACATCGgtatgttgattagtttt---tatagaaagctg---atatctacagtaacatttatgttagcatat-gttaccatctt---tctctactttcataatttctctttacttttctgctggtgctcag------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15813883|gb|BI786158.1|BI786158EST: CTGTGGAGAATATTGAAAACAAATACTTACAGTGCCCCCTTATAACATCG ATTTGGGTCTATGGAAACAGTTTTGAATCTTTCTTGGTGGCAGTGGTGGTC
genomic: CTGTGGAGAATATTGAAAACAAATACTTACAGTGCCCCCTTATAACATCGgtatgtttct ... ccatatgcagATTTGGGTCTATGGAAACAGTTTTGAATCTTTCTTGGTGGCAGTGGTGGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATTGATAGAAAAAAGAATATCTTTAAGTTGTCTCAAGGAGAATATGTTGCTGTGGAGAATATTGAAAACAAATACTTACAGTGCCCCCTTATAACATCGgtatgtttctgcttcaagcatagaacattcagtaaaattagagcaacattaattgcattgcattgcatttgtgttggatgcctagttttgtagggaaagtggacttacaaatagctcaactattaaatttatgtataatattccatatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA