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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCAGTGAGGTCTTTGTTCACCAAATGATTCACTCCATTGAGTTTGTTCTAGGTTCAGTTTCAAATACAGCCTCATATCTACGACTTTGGGCATTAAGgtttggtcagctatgattgtctcattaattacattgggtccttattttatcaattttttttatccttggttgatatttttttaccactatgcag

Basic information

species Glycine max
transcript GLYMA11G15730.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15730.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv06s0004g03450.t01 (Vitis vinifera), 5'ss of exon 16
ATTTCAGTGAGGTCTTTGTTCACCAAATGATTCACTCCATTGAGTTTGTTCTAGGTTCAGTTTCAAATACAGCCTCATATCTACGACTTTGGGCATTAAGgtttggtcagctatgattgtctcattaattacattgggtccttattttatcaattttttttatccttggttgatatttttttaccactat-gcag
|||| |||||| | ||||| || |||||||| || |||||||| ||||| || ||| ||||||||||||| || || || || ||||||||||| || ||||     |||| ||  ||  |   | | ||   |   ||    || |  |  || || ||     || ||||| || |  | ||   | | ||||
ATTTTAGTGAGATTTTTGTGCATCAAATGATACATTCCATTGAATTTGTCCTGGGTGCAGTTTCAAATACGGCATCTTACCTCCGACTTTGGGCTTTGAGgta----cagccatagtttccctctcattttagtcaagtttccatct-gtttatattattatggtttagttgacatctcct-actgttgttgcag

upper sequence: GLYMA11G15730.1 (Glycine max), 5'ss of exon 16
lower sequence: PP1S60_200V6.1 (Physcomitrella patens), 5'ss of exon 15
ATTTCAGTGAGGTCTTTGTTCACCAAATGATTCACTCCATTGAGTTTGTTCTAGGTTCAGTTTCAAATACAGCCTCATATCTACGACTTTGGGCATTAAGgt-ttggtcagctatgattgtctcattaattacattgggtccttattttatcaattttttttatccttggttg-atatttttttac-cactatgcag--------------------------------------------------------------------------
| || ||||| ||  |||| ||||||||||||||| |||||||||||||  | ||| | || || || || || || ||||| ||||| |||||| | ||||  ||  ||    | |||     | | |  | |   || ||  ||  |  ||  ||   |||   |   |   ||| |  || |  | | ||                                                                              
AGTTTAGTGAAGTACTTGTGCACCAAATGATTCACACCATTGAGTTTGTGTTGGGTGCGGTGTCCAACACTGCGTCCTATCTGCGACTCTGGGCACTCAGgtactgagcacagcttattagtggactgag-aaacgaggaccacatgattacagcttaagttagtatgaatgacataatccttaattctccatctgacttttaaactgatcactagcaaagaatttcacataatctatcgactcatctgttcttggtctttgtgcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15286470|gb|BI470361.1|BI470361
EST:     CTAGGTTCAGTTTCAAATACAGCCTCATATCTACGACTTTGGGCATTAAG                         CTTAGCTCACTCAGAACTTTCTACCGTTTTTTATGAGAAAGTCCTGCTACT
genomic: CTAGGTTCAGTTTCAAATACAGCCTCATATCTACGACTTTGGGCATTAAGgtttggtcag ... cactatgcagCTTAGCTCACTCAGAACTTTCTACCGTTTTTTATGAGAAAGTCCTGCTACT
EST: gi|208024482|gb|GD826492.1|GD826492
EST:     CTTTGGGCATTAAG                         CTTAGCTCACTCAGAACTTTCTACCG-TTTTTATGAGAAAGTCCTGCTACT
genomic: CTTTGGGCATTAAGgtttggtcag ... cactatgcagCTTAGCTCACTCAGAACTTTCTACCGTTTTTTATGAGAAAGTCCTGCTACT