1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TGGGTTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAGgtatttatgtttacatttatgtaaaaacttactataatttactggaggcttgattctactgctcaattttcacacaagaatattctttgttaataatgaa...
species | Glycine max |
transcript | GLYMA11G15470.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: AAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAG GAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCAEST: gi|11687562|gb|BF595238.1|BF595238
genomic: AAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAGgtatttatgt ... tattaaacagGAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCA
EST: AAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAG GAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCAEST: gi|207688666|gb|GD673369.1|GD673369
genomic: AAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAGgtatttatgt ... tattaaacagGAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCA
EST: AAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGTAAG GAGTTGACAGCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTTCCAEST: gi|207843904|gb|GD816035.1|GD816035
genomic: AAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAGgtatttatgt ... tattaaacagGAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCA
EST: AAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAG GAGTTGACATCTCAAGTTTCTGEST: gi|31474848|gb|CD416876.1|CD416876
genomic: AAA-GCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAGgtatttatgt ... tattaaacagGAGTTGACATCTCAAGTTTCTG
EST: AGAACACTTTTACATTCATATCGCAAG GAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCC
genomic: AGAACACTTTTACATTCATATCGCAAGgtatttatgt ... tattaaacagGAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGTTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAGgtatttatgtttacatttatgtaaaaacttactataatttactggaggcttgattctactgctcaattttcacacaagaatattctttgttaataatgaa
- - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - AAGAAC