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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGAGACTTGATTATTTTTTGGTTATATGTACTTTCCTCCCTGCTTCTCAAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttaccattgttgtgaaacctcactatgattcttgacactactagaccattgttgtgagcttaccaagagcctcttattattttgttcattttcatttgttggtaaactaattaatatcatttctttgattactggcag

Basic information

species Glycine max
transcript GLYMA11G11490.2
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208183660|gb|GD981546.1|GD981546
EST:     AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
EST: gi|10252579|gb|BE820345.1|BE820345
EST:     AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
EST: gi|254340139|gb|GR858264.1|GR858264
EST:     AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
EST: gi|193516320|gb|FK472560.1|FK472560
EST:     CCCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: CCCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
EST: gi|208158103|gb|GD957828.1|GD957828
EST:     AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
EST: gi|31310046|gb|CD395249.1|CD395249
EST:     AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
EST: gi|193699377|gb|FK639482.1|FK639482
EST:     CCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: CCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
EST: gi|193316946|gb|FK280380.1|FK280380
EST:     CCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: CCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
EST: gi|193405310|gb|FK372631.1|FK372631
EST:     AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
EST: gi|17021812|gb|BM092846.1|BM092846
EST:     AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAG                         TTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT
genomic: AAATAATGGCCTCTCCCGGGTCACACATCAAAGGTGGTGACATGGTTCAGgtgagtttac ... ttactggcagTTGAATCGGATCGCCTCGTTCTAAAGGTGTAAAGGAATTTGCGGAGCTCGT