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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATCGAGACTTTGTCAGGTGTCCTGGCGCCAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAGgtacttgaatatatttggttgttagtgcatcaaaatgatatttcctaactatatttgctgattttattgtttctttttcttgcattaag

Basic information

species Glycine max
transcript GLYMA11G08390.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G08390.1 (Glycine max), 5'ss of exon 16
lower sequence: AT2G17790.1 (Arabidopsis thaliana), 5'ss of exon 16
ACCATCGAGACTTTGTCAGGTGTCCTGGCGCCAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAGgtacttgaatatatttggttgttagtgcatcaaaatgatatttcctaactatatttgctgattttattgtttctttttcttgcattaag
|  |||||  |  |  |   ||| |   | || ||  | ||||| | |||||||||||||||||||||||||     |  ||  || || ||            |  |||   ||  ||   |    ||   | |  | |  ||  | || ||| |  
ATTATCGAAGCGCTACCTAATGTTCCATCACCTGACCTGGCATTCCGGTTGTACTTGCAATGTGCTGAGgtaaaactacgtacctgtttatt------------tagtatgcacttgctcggtaaaatg--ctcacagatctttcctatttcatcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204547|gb|BI427315.1|BI427315
EST:     GTGTCCTGGCGCCAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAG                         GCTGCAAATGACTGTGAATTGGAGCCTGTTGCTTATGAATTTTTCACCCAA
genomic: GTGTCCTGGCGCCAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAGgtacttgaat ... ttgcattaagGCTGCAAATGACTGTGAATTGGAGCCTGTTGCTTATGAATTTTTCACCCAA
EST: gi|192323264|gb|FK015270.1|FK015270
EST:     GTGTCCTGGCACCAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAG                         GCTGCAAATGACTGTGAATTGGAACCTGTTGCTTATGAATTTTTCACCCAA
genomic: GTGTCCTGGCGCCAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAGgtacttgaat ... ttgcattaagGCTGCAAATGACTGTGAATTGGAGCCTGTTGCTTATGAATTTTTCACCCAA
EST: gi|193716713|gb|FK654271.1|FK654271
EST:     GTGTCCTGGCGCCAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAG                         GCTGCAAATGACTGTGAATTGGAGCCTGTTGCTTATGAATTTTTCACCCAA
genomic: GTGTCCTGGCGCCAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAGgtacttgaat ... ttgcattaagGCTGCAAATGACTGTGAATTGGAGCCTGTTGCTTATGAATTTTTCACCCAA
EST: gi|7327057|gb|AW620855.1|AW620855
EST:     CAATGTGCTGAG                         GCTGCAAATGACTGTGAATTGGAGCCTGTTGCTTATGAATTTTTCACCCAA
genomic: CAATGTGCTGAGgtacttgaat ... ttgcattaagGCTGCAAATGACTGTGAATTGGAGCCTGTTGCTTATGAATTTTTCACCCAA
EST: gi|14011053|gb|BG725975.1|BG725975
EST:     GTGTCCTGGCGCCAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAG                         GCTGCAAATGACTGTGAATTGGAGCCTGTTGCTTATGAATTTTTCACCCAA
genomic: GTGTCCTGGCGCCAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAGgtacttgaat ... ttgcattaagGCTGCAAATGACTGTGAATTGGAGCCTGTTGCTTATGAATTTTTCACCCAA
EST: gi|12773342|gb|BG238269.1|BG238269
EST:     GTGTCCTGGCGCCAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAG                         GCTGCAAATGACTGTGAATTGGAGCCTGTTGCTTATGAATTTTTCACCCAA
genomic: GTGTCCTGGCGCCAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAGgtacttgaat ... ttgcattaagGCTGCAAATGACTGTGAATTGGAGCCTGTTGCTTATGAATTTTTCACCCAA