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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATCAGGGGGTACATCTCGCTTTTCCCGATTTGGTTTTGGCTCACAACTTTTGCAAAAGACAGTAGGGCTAGTCTTGAAACCTCGCTCTGGTCGACAGgtataattagttgttttattttctttttattcacaacagtgcttctgactgtgcctgttcaaatggttcttgttctacactatatgtag

Basic information

species Glycine max
transcript GLYMA11G03580.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03580.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv00s0229g00030.t01 (Vitis vinifera), 5'ss of exon 11
GGCATCAGGGGGTACATCTCGCTTTTCCCGATTTGGTTTTGGCTCACAACTTTTGCAAAAGACAGTAGGGCTAGTCTTGAAACCTCGCTCTGGTCGACAGgtataatt---agttgttttattttctttttattcacaacagtgcttctgactgt----gcctgttcaaatggttcttgttctacactatatgtag----------------
 |  |||||| |  | ||||||||| | || ||||||||||||||||| |||||||| ||||| || || |||||||| ||| | ||| | |  || ||||||  ||    | ||  |   || | || |  |||||| ||  | ||||   |           || |  | | |    || |  |  || | |                  
AGTTTCAGGGAGGCCTTCTCGCTTTGCACGTTTTGGTTTTGGCTCACAGCTTTTGCAGAAGACTGTGGGCCTAGTCTTAAAATCCCGCACAGACCGCCAGgtagcatcttgaattactgatttctattatgtttcacaccatggattctctttcctgaaatacctttatcttggttcccttatttatcatttattacattttgatactgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7591028|gb|AW706769.1|AW706769
EST:     TTTTGCAAAAGACAGTAGGGCTAGTCTTGAAACCTCGCTCTGGTCGACAG                         GCTAAATTGGGTGACAAAAATAAGTTCTATTATGATGAGAAGCTGAAGAGA
genomic: TTTTGCAAAAGACAGTAGGGCTAGTCTTGAAACCTCGCTCTGGTCGACAGgtataattag ... ctatatgtagGCTAAATTGGGTGACAAAAATAAGTTCTATTATGATGAGAAGCTGAAGAGA
EST: gi|9205366|gb|BE331590.1|BE331590
EST:     CTTGAAACCTCGCTCTGGTCGACAG                         GCTAAATTGGGTGACAAAAATAAGTTCTATTATGATGAGAAGCTGAAGAGA
genomic: CTTGAAACCTCGCTCTGGTCGACAGgtataattag ... ctatatgtagGCTAAATTGGGTGACAAAAATAAGTTCTATTATGATGAGAAGCTGAAGAGA