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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCTGCTGAAGAGTTGGCACCACGCTTGGAAATTATACTAAAGCACCTAATGACTGCATTTGGGAAATATCAGgtgattttctgaccttaatagttaatacatagtatttgtttattgtaaaataaatcatgtttggatgacctctattgttacgatattgtgctacatttcttatcattatgtgtatgctcagacatctttaattgtagtcttttgttctaaacttcag

Basic information

species Glycine max
transcript GLYMA10G42960.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 16
GAGGCTGCTGAAGAGTTGGCACCACGCTTGGAAATTATACTAAAGCACCTAATGACTGCATTTGGGAAATATCAGgtgattttctgaccttaatagttaatacatagtatttgtttattgtaaaataaatcatgtt--tggatgacctc-tattgttac-gatattgtgctacatttcttatcattatgtgt-atgctcagacatctttaattgtagtcttttgttctaaacttcag----------
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GAGGCTGCAGAAAAGTTAGCACCACACTTGGAAATTATTCTACAACACCTAATGTGTGCTTTTGGGAAGTACCAGgttgttttctggccctttcatgtgctagctcttcttaatatgat-catgatgagacatgatagtggttgattacatgttgaagctaacataatgtttgtatcattacaattacattttattcttattattccactggtccataaatttattccatgatttgactatatccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327364|gb|FK019581.1|FK019581
EST:     GCTTGGAAATTATACTAAAGCACCTAATGACTGCATTTGGGAAATATCAG                         AGACGAAACCTCAGAATTGTATATGATGCTATTGGAACTCTAGCTGAAGCT
genomic: GCTTGGAAATTATACTAAAGCACCTAATGACTGCATTTGGGAAATATCAGgtgattttct ... taaacttcagAGACGAAACCTCAGAATTGTATATGATGCTATTGGAACTCTAGCTGAAGCT