Sequence
atgc intronic sequence ATGC exonic sequenceGGAGCATTTACTGAACAGCATTTTGATCAGGATCTGAATTTTCTTGCTACTGAGGAGGATCCTGTAACAAAAAAGgtaagctagactctagattgtatttcaaggaattctattgtcaatgttagaatgaatggatttttttgaagagtttgagtaatggtgctaatattattccttaattccttactag
Basic information
species | Glycine max |
transcript | GLYMA10G42220.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G42220.1 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os12g44330.2 (Oryza sativa), 5'ss of exon 11
GGAGCATTTACTGAACAGCATTTTGATCAGGATCTGAATTTTCTTGCTACTGAGGAGGATCCTGTAACAAAAAAGgtaagctagactctagattgtatttcaaggaattctattgtcaatgttagaatgaatggatttttttgaagagtttgagtaatggtgctaatattattccttaattccttactag
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GGTGCCTTTACGATGCAACATTTTGACCAAGATCTCAACTTTCATGCCACTGAGGAGGATCCTGTGACTAAAAAGgtgt-ctatgc----aaccatgttctcaaatactctgtt-tgagtgcattgtt--atggattatcttaacttattcttctttttcttgcag------------------------
upper sequence: GLYMA10G42220.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G151236_T03 (Zea mays), 5'ss of exon 10
GGAGCATTTACTGAACAGCATTTTGATCAGGATCTGAATTTTCTTGCTACTGAGGAGGATCCTGTAACAAAAAAGgtaagctagactctagattgtatttcaaggaat-tctattgtcaatgttagaatgaatggatttttttgaagagtttgagtaatggtgctaatattattccttaattccttactag
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GGTGCCTTTACTATGCAACACTTTGATCAAGATCTCAATTTTCATGCTACCGAGGAGGATCCTGTGACAAAAACGgtgtgtctg---tggaaccataccctctttactatgttttgtttgggttatt-tgaattccttatttactatacttctgtctgcag------------------------------
upper sequence: GLYMA10G42220.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G147811_T03 (Zea mays), 5'ss of exon 11
GGAGCATTTACTGAACAGCATTTTGATCAGGATCTGAATTTTCTTGCTACTGAGGAGGATCCTGTAACAAAAAAGgtaag-cta-gactctagattgtatttcaaggaattctattgtcaatgttagaatgaatggatttttttgaagagtttgagtaatggtgctaatattattccttaattccttactag
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GGTGCCTTTACTATGCAACACTTCGATCAAGATCTCAATTTTCATGCTACCGAGGAGGATCCTGTGACAAAAACGgtgcgtctatggaaccataccctcttt-gatatgttctgtttggataatt----tgaattcttcatttactatacttctgtttgcag------------------------------
upper sequence: GLYMA10G42220.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv01s0011g03350.t01 (Vitis vinifera), 5'ss of exon 11
GGAGCATTTACTGAACAGCATTTTGATCAGGATCTGAATTTTCTTGCTACTGAGGAGGATCCTGTAACAAAAAAGgtaag--ctagactctagattgtatttcaaggaattctattgtcaatgttagaatgaatggattttt-ttgaagagtttgagtaatggtgctaatattattccttaattc----cttactag-------------------------------------
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GGAGCATTTACTGATCAGCACTTTGATCAGGACCTTAATTTCCATGCCACTGAGGAGGATCCTGTCACAAAGAAGgtaggatttggactcctaa---cattcttggccaatttacttattatatttgtatatatagtcgactatccaaaaaaaaatatatttgtatctatagttgtcatggatgagaggctttatggtgcctctgtaatggtaattgaacttttacttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8286158|gb|BE023717.1|BE023717EST: ATCAGGATCTGAATTTTCTTGCTACTGAGGAGGATCCTGTAACAAAAAAG ACCATAAAGCGGCTGATACTCAACATTAAGCCAAAAGATATTGGGACACTC
genomic: ATCAGGATCTGAATTTTCTTGCTACTGAGGAGGATCCTGTAACAAAAAAGgtaagctaga ... tccttactagACCATAAAGCGGCTGATACTCAACATTAAGCCAAAAGATATTGGGACACTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGCATTTACTGAACAGCATTTTGATCAGGATCTGAATTTTCTTGCTACTGAGGAGGATCCTGTAACAAAAAAGgtaagctagactctagattgtatttcaaggaattctattgtcaatgttagaatgaatggatttttttgaagagtttgagtaatggtgctaatattattccttaattccttactag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT