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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGATGATCCTCGTTTGATGACACTAGCTGGTTTGCGGCGTAGAGGCATGACTCCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatgaatttctaactacagttgtttatataaaaatactatttctaagttattgatgtggaaaagtacttgaaacatctcacactttggttcata...

Basic information

species Glycine max
transcript GLYMA10G41920.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 16
lower sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 16
GGGATGATCCTCGTTTGATGACACTAGCTGGTTTGCGGCGTAGAGGCATGACTCCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatgaatttctaactacagttgtttatataaaaatactatttctaagttattgatgtggaaaagtacttgaaacatctcacactttggttcata
|||||||||| ||| |  |||||||  |||||||| | || || ||  ||||| ||||||| || ||||| ||||||||||| ||||| || |||||||||| || ||   || | || ||  | |   | |||  |   |   || | | | ||||   |||  |        |  |   |       |   |      
GGGATGATCCACGTCTTTTGACACTTTCTGGTTTGAGACGGAGGGGTGTGACTTCAACTGCGATTAATGCATTTGTACGAGGCATTGGGATTACTAGAAGgt-tgctacatatatatatctg-aatacatcatactatt-tggcatatgtcaattatctttgttaactctgctctctattgttctgtgttaaag------

upper sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 16
lower sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 16
GGGATGATCCTCGTTTGATGACACTAGCTGGTTTGCGGCGTAGAGGCATGACTCCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatgaatt-tctaactacagttgtttatataa-aaatact----atttctaagttattgatgtggaaaagtacttgaaacatctcacactttggttcata-
|||||||||||||| | |||||| ||||||||||||| ||||| ||  ||||| ||||  |||| ||| ||||| | |||||||||||||| ||||||||||  |  ||   || | |    | |  |    || ||  |||||       ||||| |  | || || ||| |   |  |||| |    | | ||||||    | | 
GGGATGATCCTCGTCTTATGACATTAGCTGGTTTGCGACGTAGGGGGGTGACTTCAACATCAATAAATACTTTTATTCGAGGAATTGGAATCACTAGAAGgttgggcatattttgtttgggcatatctaaagatttaccaaatatctttagtttcttatctttttatttggtattatcattgatattcattatactttgtggtacag

upper sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 16
lower sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 16
GGGATGATCCTCGTTTGATGACACTAGCTGGTTTGCGGCGTAGAGGCATGACTCCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatgaatttctaactacagttgtttatat-----aaaaatactat-ttctaagttattg-atgtggaaaagtacttgaaacatctcacactttggttcata-
||||||| |||||| | |||||| |||||||||| || ||||||||  ||||| | ||  | || ||||||||||| |||||||||||||| |||||||||| ||| ||  ||| ||        || || | |      |||||||  |  || ||   |     |||||     ||  | || |    |   || ||    || | 
GGGATGACCCTCGTCTTATGACATTAGCTGGTTTACGACGTAGAGGGGTGACTTCGACCTCCATAAATGCTTTTGTTCGAGGAATTGGAATCACTAGAAGgt-tgacat--attccttgtggtgtttattcagaagttcaaaaaatatcaaattttatcatgccacatgtgcttttgtcatagatattaatgctaccttttgccacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193469471|gb|FK436335.1|FK436335
EST:     ACTCCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
genomic: ACTCCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatg ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
EST: gi|19346023|gb|BM890903.1|BM890903
EST:     CTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
genomic: CTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatg ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
EST: gi|16995857|gb|BM085229.1|BM085229
EST:     ACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
genomic: ACTCCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatg ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
EST: gi|298164021|gb|HO013666.1|HO013666
EST:     CCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
genomic: CCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatg ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
EST: gi|254327577|gb|GR837186.1|GR837186
EST:     ACTCCCACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
genomic: ACTCCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatg ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
EST: gi|193352354|gb|FK314328.1|FK314328
EST:     ACTCCAACTGCAATCTATGCTTTTGTACGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
genomic: ACTCCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatg ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
EST: gi|193436949|gb|FK402578.1|FK402578
EST:     ACTCCAACTGCAATCTATGCTTTTGTACGAGGAATTGGAATAACTAGAAG                         TGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA
genomic: ACTCCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatg ... cttgctgtagTGATGGCACTTTGATTTCTGTGGAACGCCTTGAATATCATGTTAGGGAAGA