1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTGGTGCTCACTGTCGACCTTTGCAGGAAATTCAGCCATCTGAGCTTAATGAATCAGAGGAGACTCTTCATGATGCTGAGCTGGAATCATCTAATGTAAGgtatgtatctggtgcttgatagtggctgcaaatttatttattctaccagtgtacagaaattgaagactgaaaatatttcatttgcag
species | Glycine max |
transcript | GLYMA10G39670.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GAATCAGAGGAGACTCTTCATGATGCTGAGCTGGAATCATCTAATGTAAG TTCAAGCTTCTCTGAGAGGCAAAGGAAATGGAAGGAAGAATTGGTTGAAGAEST: gi|58019030|gb|CX705772.1|CX705772
genomic: GAATCAGAGGAGACTCTTCATGATGCTGAGCTGGAATCATCTAATGTAAGgtatgtatct ... tcatttgcagTTCAAGCTTCTCTGAGAGGCAAAGGAAATGGAAGGAAGAATTGGTTGAAGA
EST: ATCATCTAATGTAAG TTCAAGCTTCTCTGAGAGGCAAAGGAAATGGAAGGAAGAATTGGTTGAAGAEST: gi|10252475|gb|BE820241.1|BE820241
genomic: ATCATCTAATGTAAGgtatgtatct ... tcatttgcagTTCAAGCTTCTCTGAGAGGCAAAGGAAATGGAAGGAAGAATTGGTTGAAGA
EST: TCTAATGTAAG TTCAAGCTTCTCTGAGAGGCAAAGGAAATGGAAGGAAGAATTGGTTGAAGAEST: gi|208245047|gb|GE037549.1|GE037549
genomic: TCTAATGTAAGgtatgtatct ... tcatttgcagTTCAAGCTTCTCTGAGAGGCAAAGGAAATGGAAGGAAGAATTGGTTGAAGA
EST: GAATCAGAGGAGACTCTTCATGATGCTGAGCTGGAATCATCTAATGTAAG TTCAAGCTTCT
genomic: GAATCAGAGGAGACTCTTCATGATGCTGAGCTGGAATCATCTAATGTAAGgtatgtatct ... tcatttgcagTTCAAGCTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTGCTCACTGTCGACCTTTGCAGGAAATTCAGCCATCTGAGCTTAATGAATCAGAGGAGACTCTTCATGATGCTGAGCTGGAATCATCTAATGTAAGgtatgtatctggtgcttgatagtggctgcaaatttatttattctaccagtgtacagaaattgaagactgaaaatatttcatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA