Sequence
atgc intronic sequence ATGC exonic sequenceGTTTAGTATGTGCTCAAGCTCATAGGCAGGAACTTATACAAGATTTGTACAAAACTTGGCAAGACCCTGTTCGTGGCACAGTTAGTGGTGGCATGATCCGgtactaataatatcaattttactattttaattctgaatattaattgttctaggttttttgatgattggtttcaattatattatatcttagtttataattttcatgtgtccttttatgtgcag
Basic information
species | Glycine max |
transcript | GLYMA10G38770.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G38770.1 (Glycine max), 5'ss of exon 16
lower sequence: AT5G43810.2 (Arabidopsis thaliana), 5'ss of exon 15
GTTTAGTATGTGCTCAAGCTCATAGGCAGGAACTTATACAAGATTTGTACAAAACTTGGCAAGACCCTGTTCGTGGCACAGTTAGTGGTGGCATGATCCGgtactaat----aatat--caattttactattttaattctgaatattaattgttctaggttttttgatgattggtttcaattatattatatcttagtttataattttcatgtgtccttttatgtgcag
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GTTTAGTTTGTGCTCAAGCTCACAGGCAAGAACTTATACAAGATTTGTATAAAACATGGCAAGATCCTGTTCGCGGTACTGTTAGTGGCGGTATGATCAGgtaataactcgcaatatttcggtttttgtagtttgattttatcggtgtatc--tcaaggtttttt--tgcttgctttctacag---------------------------------------------
upper sequence: GLYMA10G38770.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 13
GTTTAGTATGTGCTCAAGCTCATAGGCAGGAACTTATACAAGATTTGTACAAAACTTGGCAAGACCCTGTTCGTGGCACAGTTAGTGGTGGCATGATCCGgtactaataatatcaattttactatttt---aattctgaatattaattgttctaggttttttgatgattggtttcaattatattatatcttagtttataattttcatgtgtcct--tttatgtgcag
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GATTGGTTTGTGCTCAGGCTCACAGACAGGAACTGATACAAGATTTATACAAGACATGGCATGATCCTGTTCGTGGCACAGTTAGTGGTGGCATGATTCGgtataaggattcttctctatgttttatctggactttcctgtgtgtgtgcatgtgcatatttttatactgtatgtacattttttggttctagtatttagatttctttttcctcttgctttctatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19937592|gb|BQ081352.1|BQ081352EST: AAAACTTGGCAAGACCCTGTTCGTGGCACAGTTAGTGGTGGCATGATCCG AGATTTACTGGTTTCCTTCAGAAAGGCAACAGGACAAAAGCCACTACGAAT
genomic: AAAACTTGGCAAGACCCTGTTCGTGGCACAGTTAGTGGTGGCATGATCCGgtactaataa ... ttatgtgcagAGATTTACTGGTTTCCTTCAGAAAGGCAACAGGACAAAAGCCACTACGAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTAGTATGTGCTCAAGCTCATAGGCAGGAACTTATACAAGATTTGTACAAAACTTGGCAAGACCCTGTTCGTGGCACAGTTAGTGGTGGCATGATCCGgtactaataatatcaattttactattttaattctgaatattaattgttctaggttttttgatgattggtttcaattatattatatcttagtttataattttcatgtgtccttttatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG