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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGGTGAAGGATGGGACTTTGGTGAAGTTGCCAAAAATGGCCGTGGGGTAAATGCTTCTCAGTTCAATCTCCCAGGAACACAAATTGGGAGgtaggacttatctattttcattgtgttttttagtgttgcttagtaatctttcaatttcttcctttttgtcaaaatgcttaagatagaacttctaaattgg...

Basic information

species Glycine max
transcript GLYMA10G34080.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34080.1 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os04g08270.1 (Oryza sativa), 5'ss of exon 8
ATATGGTGAAGGATGGGACTTTGGTGAAGTTGCCAAAAATGGCCGTGGGGTAAATGCTTCTCAGTTCAATCTCCCAGGAACACAAATTGGGAGgtaggacttatctattttcattgtgttttttagtgttgcttagtaatctttcaatttcttcctttttgtcaaaatgcttaagatagaacttctaaattgg--
 |||||||||||||||||||||||||| |||||  |||||   |||||  ||||||| || ||| | ||| |    || |||  |||||| ||||| |      ||   || ||      |  | |||| |||  | ||     |||||    | |       ||  |||  ||| |      |  | |||    
GTATGGTGAAGGATGGGACTTTGGTGAGGTTGCACAAAATAAGCGTGGAATAAATGCATCCCAGATTAATATGAGTGGCACAGGAATTGGTAGgtaagttaatcctgaattgataccaactcatcgtgt-gctgtg-aagaggccaattatgccatacagaggaacctgcaaaagtttccttgtagatatttaaa

upper sequence: GLYMA10G34080.1 (Glycine max), 5'ss of exon 16
lower sequence: AT5G04360.1 (Arabidopsis thaliana), 5'ss of exon 16
ATATGGTGAAGGATGGGACTTTGGTGAAGTTGCCAAAAATGGCCGTGGGGTAAATGCTTCTCAGTTCAATCTCCCAGGAACACAAATTGGGAGgtaggac-----ttatctattttcattgtgt-tttttagt--gttgcttagtaatctt-tcaatttcttc--ctttttgtcaaaatgcttaagatagaact-tctaaattgg---------------------
|||||| ||||||||| ||||||||||||||||  ||||||| |||||  ||||||| || ||||||||| |    || |||  |||||| ||||  ||      |||  |   |  |||||   ||||||||   |   || |  ||||| ||| |||||||  |  ||   ||| || |       |    | | | |  ||                      
ATATGGCGAAGGATGGAACTTTGGTGAAGTTGCTGAAAATGGACGTGGAATAAATGCGTCACAGTTCAATTTAGGCGGGACAGGAATTGGAAGgtttgaaagtcattactttaataaattgtacctttttagttaatccgttggacatcttgtcactttcttcaacgattgtacaacattccctgatcaattttgttttacctgaattgtttaaatctctattcag

upper sequence: GLYMA10G34080.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv13s0019g05160.t01 (Vitis vinifera), 5'ss of exon 16
ATATGGTGAAGGATGGGACTTTGGTGAAGTTGCCAAAAATGGCCGTGGGGTAAATGCTTCTCAGTTCAATCTCCCAGGAACACAAATTGGGAGgtaggacttatctattttcattgtgttttttagtgttgcttagtaatctttcaatttcttcctttttgtcaaaatgcttaagatagaacttctaaattgg----
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| || |||||||||||    |||||    ||||| |||||    || | |       || || | | ||   ||      | ||   |   |||||   ||    |    | ||  | |    |||  |  |||  |    
ATATGGTGAAGGATGGGACTTTGGTGAAGTTGCAAAAAATGGACGTGGAGTAAATGCATCACAGTTCAATCTTTGTGGAACTGGTATTGGAAGgtac--tttcttttcccctcttatgctgtctaacattttcctcttattacttgctttctcttttgaatttcggaagc--agggattaaccacataatgagtcta