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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAAGGTAATAATGCAAAAGCAGATGATGCAATCATGCTTGACAAAGACGGTTATGTATCTGAAACCAATGCAACAAACATGgtatgctgtcaactttgccttaactgttagaagtgttttcgttctctattttgctaataagctagggattgctagataacaaggagtttgttaggtggtt...

Basic information

species Glycine max
transcript GLYMA10G29770.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G29770.1 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os03g24460.3 (Oryza sativa), 5'ss of exon 15
ATTGAAGGTAATAATGCAAAAGCAGATGATGCAATCATGCTTGACAAAGACGGTTATGTATCTGAAACCAATGCAACAAACATGgtatg---------ctgtcaactttgccttaactgttagaagtgttttcgttctctattttgctaataagctag----ggattgctagataacaaggagtttgttaggtggtt----------------
|| || |||||   |||| | || || ||||| |||||||| || ||||| |||| |||||| ||||| |||||||||||||| ||| |         |||| | | ||  | || ||   |   |  |     || | ||||     |   || |         ||  |  |||||      ||| | |    |                  
ATAGAGGGTAACCTTGCACAGGCTGAGGATGCCATCATGCTAGATAAAGATGGTTTTGTATCAGAAACAAATGCAACAAACATTgtaagtgtacatggctgttatcattaacatatctcgaatttgcctcaatattttttattgaaggagagagtttacctcaattttattcataacttttgttttctaaaaatgccactgtgttaattgcag

upper sequence: GLYMA10G29770.1 (Glycine max), 5'ss of exon 16
lower sequence: AT5G27410.2 (Arabidopsis thaliana), 5'ss of exon 25
ATTGAAGGTAATAATGCAAAAGCAGATGATGCAATCATGCTTGACAAAGACGGTTATGTATCTGAAACCAATGCAACAAACATGgtatgctgtcaactttg-----ccttaactgtta--gaagtgttttcgttctctattttgctaataagctagggattgctagataacaaggagtttgttag-gtggtt
|||||| | || ||||| || |  ||||||||||||||||||||||| || || | ||| ||||||||||||||||| ||||| ||| | |       |||       || ||| | |  |||  ||  |   ||||| | | ||     |  | |  | |   |      | | | | |||| | |  |  
ATTGAAAGCAACAATGCCAACGTCGATGATGCAATCATGCTTGACAAGGATGGGTTTGTGTCTGAAACCAATGCAACCAACATTgtaagatcctcggattgaacattttttactctcaaagaaccgtactgaatctctgtgtagc-----atttggaaactaacatggtggaggaactctgttggtgcag--

upper sequence: GLYMA10G29770.1 (Glycine max), 5'ss of exon 16
lower sequence: AT3G05190.1 (Arabidopsis thaliana), 5'ss of exon 15
ATTGAAGGTAATAATGCAAAAGCAGATGATGCAATCATGCTTGACAAAGACGGTTATGTATCTGAAACCAATGCAACAAACATGgtatgctgtcaactttgccttaactgttagaagtgttttcgttctctattttgctaataagctagggattg---ctaga--taacaaggagtttgttaggtggtt-----
|||||| |||| ||  | || || | ||| || || |||||||||||||| |||||||| ||||||||||||||||| ||||| ||| |    |  |||||  | |  | |  | ||  ||||  |||  ||  ||  ||| |  |||   || |   |||    |  |||  | |||  |   || ||     
ATTGAAAGTAACAACACGAATGCTGCTGACGCCATTATGCTTGACAAAGATGGTTATGTGTCTGAAACCAATGCAACCAACATTgtaagtaacc--ctttga-tgatttatccgcaggattttatttcgatagattattaagagactatatatagaagctaatattgtcaacaaatttactttatgtttgacag

upper sequence: GLYMA10G29770.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv14s0128g00100.t01 (Vitis vinifera), 5'ss of exon 25
ATTGAAGGTAATAATGCAAAAGCAGATGATGCAATCATGCTTGACAAAGACGGTTATGTATCTGAAACCAATGCAACAAACATGgtatg-ctgtcaactttgccttaactgttagaagtgttttcgttctctattttgctaataagctagggattgctagataacaaggagtttgttaggtggtt
|| ||||| ||||||||||| || ||||||||||||||||||||||| || |||||||| |||||||| ||||| |||||||| ||| | |||     | ||  ||     ||   | |  |||   | |  |    | |    | | |    ||| |  || | |||     | |  |||  ||
ATAGAAGGGAATAATGCAAATGCTGATGATGCAATCATGCTTGACAAGGATGGTTATGTTTCTGAAACAAATGCTACAAACATTgtaagactgcattttctgtattttggtttcccattcctttgcctttgcaaggaggtgg-gacccaccatttgttctatcagaagttcaatttggggtattt