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CTCTGCTAGAAAAAGAAAGAGCTGTAACTGAAGAGTTTGAAGCTGTCAGGAAAGAGGAGAGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGAGAAGgtaaagctatttttgtttcatttgtcattacttgtattatttataacattagtacctagccaatagtttatagtgtgcacggtttaggtggacacattaa...
species | Glycine max |
transcript | GLYMA10G04300.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: AAAGAGGAGAGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGAGAAG GTACCACTTGTTCATGGATGCTTTTACCCATATATCTGGTAATATAGATAAEST: gi|298174268|gb|HO017604.1|HO017604
genomic: AAAGAGGAGAGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGAGAAGgtaaagctat ... ttggatgcagGTACCACTTGTTCATGGATGCTTTTACCCATATATCTGGTAATATAGATAA
EST: AAAGAGGAGAGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGAGAAG GTACCACTTGTTCATGGATGCTTTTACCCATATATCTGGTAATATAGATAAEST: gi|254336328|gb|GR842507.1|GR842507
genomic: AAAGAGGAGAGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGAGAAGgtaaagctat ... ttggatgcagGTACCACTTGTTCATGGATGCTTTTACCCATATATCTGGTAATATAGATAA
EST: AAAGAGGAGAGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGAGAAG GTACCACTTGTTCATGGATGCTTTTACCCATATATCTGGTAATATAGATAAEST: gi|11687513|gb|BF595189.1|BF595189
genomic: AAAGAGGAGAGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGAGAAGgtaaagctat ... ttggatgcagGTACCACTTGTTCATGGATGCTTTTACCCATATATCTGGTAATATAGATAA
EST: AAAGAGGAGAGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGAGAAG GTACCACTTGTTCATGGATGCTTTTACCCATATATCTGGTAATATAGATAAEST: gi|13312745|gb|BG406396.1|BG406396
genomic: AAAGAGGAGAGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGAGAAGgtaaagctat ... ttggatgcagGTACCACTTGTTCATGGATGCTTTTACCCATATATCTGGTAATATAGATAA
EST: AAAGAGGAGAGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGAGAAG GTACCACTTGTTCATGGATGCTTTTACCCATATATGTGGTGATATAGGATA
genomic: AAAGAGGAGAGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGAGAAGgtaaagctat ... ttggatgcagGTACCACTTGTTCATGGATGCTTTTACCCATATATCTGGTAATATAG-ATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTGCTAGAAAAAGAAAGAGCTGTAACTGAAGAGTTTGAAGCTGTCAGGAAAGAGGAGAGGGAAAAAACACAGAGATTCAATGAGGTTAAGCAGAGAAGgtaaagctatttttgtttcatttgtcattacttgtattatttataacattagtacctagccaatagtttatagtgtgcacggtttaggtggacacattaa
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG