1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
ATCAAGGAGCTTGAGAGAAAACTGAAAGAGCAGGAACAAAGCTCAATGTCCTTGCTTCGTCAACAGgtactttccacttctcaaataagaaatttaacaatttgtttctgttgtgcatttgatcacagtcatttaagagtaatatcctagttaataactccttcac...
species | Glycine max |
transcript | GLYMA09G33340.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GAAAACTGAAAGAGCAGGAACAAAGCTCAATGTCCTTGCTTCGTCAACAG ATGGAACAACTGGAGGACAGATACCGAGAGCGAGAGCAACAGTGGCAACAAEST: gi|51336259|gb|CO980125.1|CO980125
genomic: GAAAACTGAAAGAGCAGGAACAAAGCTCAATGTCCTTGCTTCGTCAACAGgtactttcca ... gtcatgacagATGGAACAACTGGAGGACAGATACCGAGAGCGAGAGCAACAGTGGCAACAA
EST: GAAAACTGAAAGAGCAGGAACAAAGCTCAATGTCNNNGCTTCGTCAACAG ATGGAACAACTGGAGGACAGATACCGAGAGCGAGAGCAACAGTGGCAACAAEST: gi|192309002|gb|FK001778.1|FK001778
genomic: GAAAACTGAAAGAGCAGGAACAAAGCTCAATGTCCTTGCTTCGTCAACAGgtactttcca ... gtcatgacagATGGAACAACTGGAGGACAGATACCGAGAGCGAGAGCAACAGTGGCAACAA
EST: GAAAACTGAAAGAGCAGGAACAAAGCTCAATGTCCTTGCTTCGTCAACAG ATGGAACAACTGGAGGACAGATACCGAGAGCGAGAGCAACAGTGGCAACAA
genomic: GAAAACTGAAAGAGCAGGAACAAAGCTCAATGTCCTTGCTTCGTCAACAGgtactttcca ... gtcatgacagATGGAACAACTGGAGGACAGATACCGAGAGCGAGAGCAACAGTGGCAACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAAGGAGCTTGAGAGAAAACTGAAAGAGCAGGAACAAAGCTCAATGTCCTTGCTTCGTCAACAGgtactttccacttctcaaataagaaatttaacaatttgtttctgttgtgcatttgatcacagtcatttaagagtaatatcctagttaataactccttcac
- - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc