1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TTTTCGCATGAGATCTTTGATGGATGTTCCTAGGCTTAAGTTGCAGCTGCTTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAGgtaaggaattttttacaaccgtcatgcttagttgtcggattttgcttataaaatgatggggggactgtattcacgtcctcctgatatttttgaggtggtgaagactggcaccttgtttgaacttttcctatttcaacgttgtgctgctttgtcttaaacagaactttggagattgatataaacttttctgccag
species | Glycine max |
transcript | GLYMA09G32870.2 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAG GTGTGTTTGCCCACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCTEST: gi|7591109|gb|AW706849.1|AW706849
genomic: TGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAGgtaaggaatt ... tttctgccagGTGTGTTTGCCCACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCT
EST: TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAG GTGTGTTTGCCCACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCTEST: gi|120493682|gb|EH221849.1|EH221849
genomic: TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAGgtaaggaatt ... tttctgccagGTGTGTTTGCCCACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCT
EST: TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAG GTGTGTTTGCCCACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCT
genomic: TTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAGgtaaggaatt ... tttctgccagGTGTGTTTGCCCACTGTAGTAGTGGAATTTCTTAGACAGGCAAAGGCTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTCGCATGAGATCTTTGATGGATGTTCCTAGGCTTAAGTTGCAGCTGCTTAATATGCCCATGGAGGCAATCTTGAAACATAAATTGAGTCCCTTGAAGgtaaggaattttttacaaccgtcatgcttagttgtcggattttgcttataaaatgatggggggactgtattcacgtcctcctgatatttttgaggtggtgaagactggcaccttgtttgaacttttcctatttcaacgttgtgctgctttgtcttaaacagaactttggagattgatataaacttttctgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG