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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAGGAGGCTTTCTGCCTGTGAGACCATGGGCTCTGCCACAACCATATGTAGTGATAAGACTGGCACATTGACCATGAATCAGgttagttgtggtgctgcattttatatgttgatttaaacaaacaatatttctttataactacttagttcaacttcttggagggtacttcttgcaattgttt...

Basic information

species Glycine max
transcript GLYMA09G06890.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G06890.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM5G892495_T02 (Zea mays), 5'ss of exon 7
GTAAGGAGGCTTTCTGCCTGTGAGACCATGGGCTCTGCCACAACCATATGTAGTGATAAGACTGGCACATTGACCATGAATCAGgttagttgtggtgctgcattttatatgttgatttaaacaaacaatatttctttataactacttagttca--acttct----tggagggtactt---cttgcaattgttt----------
||  ||||||||||||||||||| || ||||| || || ||||| || |||||||| |||||||| ||||| ||  | || ||||||||||||  |  |   ||| | ||| |  ||  ||  |    |  ||  ||   ||||  ||||  |   | |||    | | |  |  ||   |  | || | |||          
GTTCGGAGGCTTTCTGCCTGTGAAACAATGGGTTCAGCGACAACTATTTGTAGTGACAAGACTGGTACATTAACATTAAACCAGgttagttgtttttat---tttgaaatggtccttgtaattattctttattagttggtactatctagtaaattgcctctggttttgtgattgtttgaccccggaactttttgttgttcaag

upper sequence: GLYMA09G06890.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G140328_T02 (Zea mays), 5'ss of exon 17
GTAAGGAGGCTTTCTGCCTGTGAGACCATGGGCTCTGCCACAACCATATGTAGTGATAAGACTGGCACATTGACCATGAATCAGgt-tagttgtggtgctgcattttat--atgttgatttaaa-----caaacaatatttctttataa--ctacttagttcaacttcttggagggtacttcttgcaattgttt-----
|| |||||||||||||| ||||| || ||||| ||||||||||| || || ||||| ||||||||||| || ||  | ||||||||  | | ||| |  | || |||||  ||  |||  || |     || | |||  |  ||  | |  ||  || |  |   || ||  |   |  |  |     ||| ||     
GTCAGGAGGCTTTCTGCATGTGAAACGATGGGTTCTGCCACAACAATCTGCAGTGACAAGACTGGCACCTTAACTTTAAATCAGgtgcaatggtgtttattcactttatacatactgacatacatgtttcagataattctgtttgttgaatctgattggccctgatttttaaattctcttcttcctggttgattttaag

upper sequence: GLYMA09G06890.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G391042_T02 (Zea mays), 5'ss of exon 17
GTAAGGAGGCTTTCTGCCTGTGAGACCATGGGCTCTGCCACAACCATATGTAGTGATAAGACTGGCACATTGACCATGAATCAGgt-tagttgtggtgctgcattttatatgttgatttaaacaaacaatatttctttataactacttagttcaacttcttggagggtacttcttgcaattgttt-----
|| |||||||||||||| || || || ||||| ||||||||||| || || ||||| ||||||||||| |||||  | ||||||||  | | ||| |  | || ||||||    | || | | |        ||  ||| | ||  || |  |   || |   |   |  |  |    |||| ||     
GTGAGGAGGCTTTCTGCATGCGAAACGATGGGTTCTGCCACAACAATCTGCAGTGACAAGACTGGCACCTTGACGTTAAATCAGgtgcaatggtgtttattcactttatacac-gcttcagatattt--ccgtttgttaaatctgattggccctgattttaaaattctcttcttcctgattgattttaag

upper sequence: GLYMA09G06890.1 (Glycine max), 5'ss of exon 16
lower sequence: AT4G29900.1 (Arabidopsis thaliana), 5'ss of exon 18
GTAAGGAGGCTTTCTGCCTGTGAGACCATGGGCTCTGCCACAACCATATGTAGTGATAAGACTGGCACATTGACCATGAATCAGgttagttgtggtgctgcattttatatgttgatttaaacaaacaatatttctttataactactta-gttcaacttcttggagggtacttcttgcaattgttt-----------------------------------------------
||  | |||||||| |||||||| |||||||| ||||| ||||| || || |||||||||||||| || |||||| | ||  |||| | |  |||||||     || | | |  ||||    | ||| |      |||  | |  |    |     ||| | |     |  | |||| ||| |                                                 
GTGCGTAGGCTTTCAGCCTGTGAAACCATGGGGTCTGCAACAACAATTTGCAGTGATAAGACTGGAACTTTGACCTTAAACGAGgtgaatcttggtgctctgccttctttttgtatttgctaacacacttaacacttaccagttttggtatgtgctttcctagttatgagcttttgctattttgaattgtgtacccaacaagcgggtcccctacgactttcttttttctcag

upper sequence: GLYMA09G06890.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 19
GTAAGGAGGCTTTCTGCCTGTGAGACCATGGGCTCTGCCACAACCATATGTAGTGATAAGACTGGCACATTGACCATGAATCAGgttagttgtggtgctgc-attttatatgttgatttaaacaaacaatatttctttataactacttagttcaacttcttggagggtacttcttgcaattgttt
||| ||||||||||||| |||||||||||||||||| |||| || || || ||||||||||| || ||  | ||  |||||||||||  || |   ||    | ||||| |    ||||   ||   ||    |   | |  ||   |  ||  | ||    |     | || ||    |||  |
GTACGGAGGCTTTCTGCTTGTGAGACCATGGGCTCTTCCACGACTATTTGCAGTGATAAGACAGGAACTCTAACTTTGAATCAGgttgattatatggcaattactttat-tacatattttgtcactgaagtcctgaatctggcttaattatttgaatttgaaggttaaatttatttattttgagt

upper sequence: GLYMA09G06890.1 (Glycine max), 5'ss of exon 16
lower sequence: PP1S8_288V6.1 (Physcomitrella patens), 5'ss of exon 18
GTAAGGAGGCTTTCTGCCTGTGAGACCATGGGCTCTGCCACAACCATATGTAGTGATAAGACTGGCACATTGACCATGAATCAGgttagttgtggtgctg----------cattttatatgttgatttaaacaaacaatatttctttataact-acttagttcaacttcttggagggtacttcttgcaattgttt-----------------------------------
||  ||   || || ||||| ||||||||||| || || ||||| || ||||||||||||||||| ||| | ||||  ||  |||| | |||      |           | || | ||  |   ||| | ||   | |     | | | |||   ||| || || || | ||  | |  |||||| |  | ||                                    
GTGCGGCACCTATCAGCCTGCGAGACCATGGGATCCGCTACAACTATCTGTAGTGATAAGACTGGAACACTCACCACTAACAAGgtaaattgctaatttctttacacgatcgttatctacttatgtttgatcatttattggccatatgtcacttggttattttaatttttaggtagttttttcttggacgtattgaaattgaggattgccgtttgatgacacaactgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193436137|gb|FK403829.1|FK403829
EST:     CTGCCACAACCATATGTAGTGATAAGACTGGCACATTGACCATGAATCAG                         ATGACTGTGGTTGAGGCTTACGCTGGGGGTAAGAAAATTGATCCTCCTCAC
genomic: CTGCCACAACCATATGTAGTGATAAGACTGGCACATTGACCATGAATCAGgttagttgtg ... aatatgacagATGACTGTGGTTGAGGCTTACGCTGGGGGTAAGAAAATTGATCCTCCTCAC
EST: gi|193364709|gb|FK329354.1|FK329354
EST:     CTGCCACAACCATATGTAGTGATAAGACTGGCACATTGACCATGAATCAG                         ATGACTGTGGTTGAGGCTTACGCTAGGGGGTAA
genomic: CTGCCACAACCATATGTAGTGATAAGACTGGCACATTGACCATGAATCAGgttagttgtg ... aatatgacagATGACTGTGGTTGAGGCTTACGCT-GGGGGTAA