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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTAAAACTCGTGTTTGGGAAGAAGCACCTGACATGTCATTCACATATGATGGTGTTCCTCTTCTTGCTATGTTGGATGAATATGCCATGCTCAGGCATgtatgggaagaggaagaatgaaggatgcaggtaagtttcattgatgggatgattagaataattgattatcaaaataattttagcacttgctaataaaaaagtaagcaaagtgaactatcaaaagagttcatatcacattctttag

Basic information

species Glycine max
transcript GLYMA08G43450.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G43450.1 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os06g20370.1 (Oryza sativa), 5'ss of exon 9
TGCTAAAACTCGTGTTTGGGAAGAAGCACCTGACATGTCATTCACATATGATGGTGTTCCTCTTCTTGCTATGTTGGATGAATATGCCATGCTCAGGCATgtatgggaagaggaagaatgaaggatgcaggtaagtttcattgatgggatgattagaataattgattatcaaaataattttagcacttgctaataaaaaagtaagcaaagtgaactatcaaaagagttcatatcacattctttag
                              ||   |||| || |  ||||||||||| |||||||| ||||||||||||||||||| |||||| ||||| | | ||||||| ||  |   ||| |||  ||| |||  || |       | | |     |     ||     || |  | |  | ||||    |  |      |      | || | ||        |||| |            
------------------------------TGGTCTGTCCTTTATGTATGATGGTGTACCTCTTCTAGCTATGTTGGATGAATATGTCATGCTAAGGCAGGAAAGGGAAGAAGATAAGAAAAGAATGAGGgtgagtgccacttcctctttaaatgttgaatccattttcttgaacacgtatcacccttgagcgttgat---cgaattcttttaaatctcgtgttgagtcatgt------------

upper sequence: GLYMA08G43450.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G101874_T01 (Zea mays), 5'ss of exon 10
TGCTAAAACTCGTGTTTGGGAAGAAGCACCTGACATGTCATTCACATATGATGGTGTTCCTCTTCTTGCTATGTTGGATGAATATGCCATGCTCAGGCATgtatgggaagaggaagaatgaaggatgcaggtaagtttcattgatgggatga--ttagaataattgattatcaaaataat--tttagcacttgctaataaaaaagtaagcaaagtgaactatcaaaagagttcatatcacattctttag
                              ||   |||| || |  ||||||||||| |||||||| |||||||||||||| ||||| |||||||| || | | ||||||| ||| |   ||| |||| ||| ||| | ||        | |   |||||      || | |   || |   || |    |||   || |     |      |   |  |   |     ||                  
------------------------------TGGTCTGTCCTTTATGTATGATGGTGTACCTCTTCTAGCTATGTTGGATGAGTATGCTATGCTCAGACAAGAAAGGGAAGAAGAAAAGAAAAGAATGCGGgttagtgtgatatgctctttaaatctagaagccactatcacctggatgacaattcaattattgtccattacgttctgtttggaccta--tgctagtctggtc-----------------

upper sequence: GLYMA08G43450.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G465169_T02 (Zea mays), 5'ss of exon 9
TGCTAAAACTCGTGTTTGGGAAGAAGCACCTGACATGTCATTCACATATGATGGTGTTCCTCTTCTTGCTATGTTGGATGAATATGCCATGCTCAGGCATgtatgggaagaggaagaatgaaggatgcaggtaagtttcattgatgggatgattagaataattgattatcaaaataattttag--cacttgctaataaaaaagtaagcaaagtgaactatcaaaagagttcatatcacattctttag
                              ||   |||| || |  ||||||||||| |||||||| |||||||||||||| ||||  ||||||||||| | | ||||||| ||  |   ||| | || ||||||| | ||        | | |  |  |||  |||||||     ||   |   || ||  |    |   |||   |    || ||        ||||                  
------------------------------TGGTCTGTCTTTTATGTATGATGGTGTACCTCTTCTAGCTATGTTGGATGAGTATGTTATGCTCAGGCAGGAAAGGGAAGAAGAGAAGAAAAGAACGCGGgtaagtgtgatatgctctttaaatctag-aatccattatcacctggatgccaattcatttattgtccattgagtt--ctgtttggacctatgctggagtctgg--------------

upper sequence: GLYMA08G43450.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv19s0090g01230.t01 (Vitis vinifera), 5'ss of exon 7
TGCTAAAACTCGTGTTTGGGAAGAAGCACCTGACATGTCATTCACATATGATGGTGTTCCTCTTCTTGCTATGTTGGATGAATATGCCATGCTCAGGCATgtatgggaagaggaagaatgaaggatgcaggtaagtttcatt-gatgggatgattagaataattgattatcaaaataattttagcacttg--ctaataaaaaagtaagcaaagtgaactat-caaaagagttcatatcacattctttag--------------------------------------------------------
                              ||  ||  |||| || || || ||||||||||| ||||| ||| | ||||||||||| |||||||||||||   | ||||| ||  |  | || |||  ||||||  | | | ||| |  |  | |   | |       ||||     |||   || | |  | ||| ||     |    |  | ||   | ||  ||  ||        |||| | |                                                         
------------------------------TGGTATACCATTTACTTACGACGGTGTTCCTCTCCTTGCCATGCTAGATGAATATGCTATGCTCAGGCATGATAGAGAAGAAGAGAAGCGGAGAATGAGGgtaaggctaactagattgctttgtgaaggtcagatgggctcaagcatgtttccacattggacccaattaattctgacatgacctcaatcctacatgagcttttggtgtttattcatcaccattctaggctatttgtttcttgtactaaattgggtataacatctataaatgacag