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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTGAGAAGGGGTGCTATGAAAGATCACCAATCAATCATGTTGACAAATTTTCTTGTCCCATTATTTTATTTCAAGGATTGGATGACAAGgttagcaacaattgcaactattttcctttcacatatttattacttaaaggactctggagtggaaattgtcaacttattcctaaatctactctatattactgataaaaattaatccgataaatatgtcttacacaatgcag

Basic information

species Glycine max
transcript GLYMA08G42730.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G42730.1 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os06g11180.1 (Oryza sativa), 5'ss of exon 16
GAGGTGAGAAGGGGTGCTATGAAAGATCACCAATCAATCATGTTGACAAATTTTCTTGTCCCATTATTTTATTTCAAGGATTGGATGACAAGgttagcaacaattgcaactattttcctttcacatatttattacttaaaggactctggagtggaaattgtcaacttattcctaaatctactctatattactgataaaaattaatccgataaatatgtcttacacaatgcag
||  ||| || |  | |||||| |||||||| |||||   ||||||||||||| | |||||  ||||||| |||||||| |||||||| |||||  |  |  |||||      |   || |   | |    | |  |     | | |  ||| | |      ||| | |     ||  |  |  ||      | | |||||| |                            
GAAATGAAAATGCTTACTATGAGAGATCACCGATCAACTTTGTTGACAAATTTACATGTCCAGTTATTTTGTTTCAAGGCTTGGATGATAAGgtatgtgatgattgcggaggatcaactattttagacaagtcatgtttgtcagtgtatagttgta-----taacatgtc----aaagtgttacatgc----ggtgaaaatttac---------------------------

upper sequence: GLYMA08G42730.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv18s0001g11150.t01 (Vitis vinifera), 5'ss of exon 16
GAGGTGAGAAGGGGTGCTATGAAAGATCACCAATCAATCATGTTGACAAATTTTCTTGTCCCATTATTTTATTTCAAGGATTGGATGACAAGgttagcaacaattgcaactattttcctttcacatatttattacttaaaggactctggagtggaaattgtcaacttattcctaaatctactctatattactgataaaaattaatccgataaatatgtcttacacaatgcag
|| |||| |  |  | || ||| || ||||| ||||||  |||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||       |  | |||  |  ||| | | || | || |||  ||   |  ||   |  ||   | | |  |  |||   ||    | |   ||    | | |  |    || ||                         
GAAGTGAAAGTGCTTACTTTGAGAGGTCACCGATCAATTTTGTTGATAAATTTTCTTGCCCCATTATTTTATTCCAAGGATTGGAAGACAAGgt-------atgtacaa--aacttcatcttactttttgatttttttttgtccttgaggatg---actatgga--tatcattatggtttcagcatgg-gcaggttgagcccaaccc-------------------------

upper sequence: GLYMA08G42730.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv18s0001g11140.t01 (Vitis vinifera), 5'ss of exon 16
GAGGTGAGAAGGGGTGCTATGAAAGATCACCAATCAATCATGTTGACAAATTTTCTTGTCCCATTATTTTATTTCAAGGATTGGATGACAAGgttagcaacaattgcaactattttcctttcacatatttattacttaaaggactctggagtggaaattgtcaacttattcctaaatctactctatatta-ctgataaaaattaatccgataaatatgtcttacacaatgcag
||||||| |  |  | || ||| || ||||| |||||    ||||| ||||||||||||||||| |||||||| || |||||||| ||||||||     | || | ||     |    || ||  || |   | |   | ||| | |  | |  | ||  |   ||    | | | ||||   || | |  || |||   |                                
GAGGTGAAAGTGATTACTTTGAGAGGTCACCTATCAACTTCGTTGATAAATTTTCTTGTCCCATAATTTTATTCCAGGGATTGGAAGACAAGgt--atgataaattca-----tactattacaagtaatagctgcc--agggattatacaatctatatctttttctc-cccatcagtctaagataaaatgtcttatactcac-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208261891|gb|GE058300.1|GE058300
EST:     TTGACAAATTTTCTTGTCCCATTATTTTATTTCAAGGATTGGATGACAAG                         GTTGTGCCCCCAGAACAAGCTCGGAAAATTTACCAGGCTCTGAAGGAAAAG
genomic: TTGACAAATTTTCTTGTCCCATTATTTTATTTCAAGGATTGGATGACAAGgttagcaaca ... cacaatgcagGTTGTGCCCCCAGAACAAGCTCGGAAAATTTACCAGGCTCTGAAGGAAAAG