1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TGGATATGGACATGGGGTTTTACGCCAGACAGATCCAAGATACACATGTCAGAGGGAGTTTGCTTTGAAGCATTTGCCTAATGATCCATATTTCCAGTTGgtaatcacttatttcctaattcaagattgtgttttctttggagtgctttcttgcgacacagccaaagctcacttgtaatttaatttcttcatgttctaatgcaactgaccctttcag
species | Glycine max |
transcript | GLYMA08G16770.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: AGCATTTGCCTAATGATCCATATTTCCAGTTG G-CTCAAAAGATAAAAGAGGTTGTGCCTCCCATTCGTACCAAGTTAGGCAAEST: gi|23057280|gb|BU577954.1|BU577954
genomic: AGCATTTGCCTAATGATCCATATTTCCAGTTGgtaatcactt ... accctttcagGTGTC-TAAGATAAAAGAGGTTGTGCCTCCCATTCTTACCAAGTTAGGCAA
EST: AGAGGGAGTTTGCTTTGAAGCATTTGCCTAATGATCCATATTTCCAGTTG GTGTCTAAGATAAAAGAGGTTGTGCCTCCCATTCTTACCAAGTTAGGCAAGEST: gi|9440345|gb|BE440851.1|BE440851
genomic: AGAGGGAGTTTGCTTTGAAGCATTTGCCTAATGATCCATATTTCCAGTTGgtaatcactt ... accctttcagGTGTCTAAGATAAAAGAGGTTGTGCCTCCCATTCTTACCAAGTTAGGCAAG
EST: AGAGGGAGTTTGCTTTGAAGCATTTGCCTAATGATCCATATTTCCAGTTG GTGTCTAAGATAAAAGAGGTTGTGCCTCCCATTCTTACCAAGTTAGGCAAGEST: gi|15287775|gb|BI471666.1|BI471666
genomic: AGAGGGAGTTTGCTTTGAAGCATTTGCCTAATGATCCATATTTCCAGTTGgtaatcactt ... accctttcagGTGTCTAAGATAAAAGAGGTTGTGCCTCCCATTCTTACCAAGTTAGGCAAG
EST: AGAGGGAGTTTGCTTTGAAGCATTTGCCTAATGATCCATATTTCCAGTTG GTGTCTAAGATAAAAGAGGTTGTGCCTCCCATTCTTACCAAGTTAGGCAAGEST: gi|21994889|gb|BQ786417.1|BQ786417
genomic: AGAGGGAGTTTGCTTTGAAGCATTTGCCTAATGATCCATATTTCCAGTTGgtaatcactt ... accctttcagGTGTCTAAGATAAAAGAGGTTGTGCCTCCCATTCTTACCAAGTTAGGCAAG
EST: AGAGGGAGTTTGCTTTGAAGCATTTGCCTAATGATCCATATTTCCAGTTG GTGTCTAAGATAAAAGAGGTTGTGCCTCCCATTCTTACCAAGTTAGGCAAGEST: gi|15664905|gb|BI702276.1|BI702276
genomic: AGAGGGAGTTTGCTTTGAAGCATTTGCCTAATGATCCATATTTCCAGTTGgtaatcactt ... accctttcagGTGTCTAAGATAAAAGAGGTTGTGCCTCCCATTCTTACCAAGTTAGGCAAG
EST: AGAGGGAGTTTGCTTTGAAGCATTTGCCTAATGATCCATATTTCCAGTTG GTGTCTAAGATAAAAGAGGTTGTGCCTCCCATTCTTACCAAGTTAGGCAAG
genomic: AGAGGGAGTTTGCTTTGAAGCATTTGCCTAATGATCCATATTTCCAGTTGgtaatcactt ... accctttcagGTGTCTAAGATAAAAGAGGTTGTGCCTCCCATTCTTACCAAGTTAGGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGATATGGACATGGGGTTTTACGCCAGACAGATCCAAGATACACATGTCAGAGGGAGTTTGCTTTGAAGCATTTGCCTAATGATCCATATTTCCAGTTGgtaatcacttatttcctaattcaagattgtgttttctttggagtgctttcttgcgacacagccaaagctcacttgtaatttaatttcttcatgttctaatgcaactgaccctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC