Sequence
atgc intronic sequence ATGC exonic sequenceATAGTTGATGCCTTGGAGCTTAGCAGACTGACCATGAATACTATAAAACAAAATCTTTGGTGGGCTTTCATATACAACATTgtaagtcttctgctgtccaattatataaattgatcggcatgtttgtggggtttgtatggctaagaattttccacatgcttaattcattgccatactttcc...
Basic information
species | Glycine max |
transcript | GLYMA08G07710.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G07710.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv12s0142g00330.t01 (Vitis vinifera), 5'ss of exon 8
ATAGTTGATGCCTTGGAGCTTAGCAGACTGACCATGAATACTATAAAACAAAATCTTTGGTGGGCTTTCATATACAACATTgtaagtcttctgctgtccaattatataaattgatcggcatgtttgtggggtttgtatggctaagaat-tttccacatgcttaattcattgccatactttcc---------
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TTGCTTGATGCTTTCGAACTAAGCAGACTAACCATGAAGACCGTGAAACAAAATCTTTGGTGGGCCTTTGCATATAACATTgtaagttcttt----tgcaac-atacaagtatattg-catttcttt----tttttatgcccaaacctatttttaagaggtagagaatttgttgtaacttgcaaccttttg
upper sequence: GLYMA08G07710.1 (Glycine max), 5'ss of exon 16
lower sequence: PP1S121_53V6.1 (Physcomitrella patens), 5'ss of exon 17
ATAGTTGATGCCTTGGAGCTTAGCAGACTGACCATGAATACTATAAAACAAAATCTTTGGTGGGCTTTCATATACAACATTgtaagtc--ttctgctgtccaattatataaattgatcggcatgtttgtggg-gtttgtatggctaagaattttccac-atgcttaattcattgccatactttcc
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GTTGTTGATGCTCTTGAGTTGAGTCGTTTAACGCTCAAGAAGATAAAACAGAATCTTTGGTGGGCATTCATGTATAATATTgtaagtggattcatctgtggtttcatctcaacttatgattgtgtttatatctggtcgcaaatctagacgctcttctcgatccttaa---atgatcatattctg-
upper sequence: GLYMA08G07710.1 (Glycine max), 5'ss of exon 16
lower sequence: PP1S19_275V6.1 (Physcomitrella patens), 5'ss of exon 17
ATAGTTGATGCCTTGGAGCTTAGCAGACTGACCATGAATACTATAAAACAAAATCTTTGGTGGGCTTTCATATACAACATTgtaagtcttctgctgtccaattatataaattgatcggcatgtttgtg---gggtttgtatggctaagaattttccacatgcttaattcattgccatactttcc-
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GTTGTTGATGCTATCGAATTGAGCCGGTTAACGCTTAAGAAAATCAAGCAGAATCTTTGGTGGGCATTCATATACAACATTgtaagtcaatacatctgcaattctatacattgttggtcattcctatccacaaggatgtaagtatggcagtt---ggtatggaaatttcgtt-tgattcttaaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7234125|gb|AW569465.1|AW569465EST: CCATGAATACTATAAAACAAAATCTTTGGTGGGCTTTCATATACAACATT GTAGGAATTCCAATTGCAGCTGGAGTGTTATTTCCCATAAATGGGACTGTG
genomic: CCATGAATACTATAAAACAAAATCTTTGGTGGGCTTTCATATACAACATTgtaagtcttc ... ctttatacagGTAGGAATTCCAATTGCAGCTGGAGTGTTATTTCCCATAAATGGGACTGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAGTTGATGCCTTGGAGCTTAGCAGACTGACCATGAATACTATAAAACAAAATCTTTGGTGGGCTTTCATATACAACATTgtaagtcttctgctgtccaattatataaattgatcggcatgtttgtggggtttgtatggctaagaattttccacatgcttaattcattgccatactttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggggt