Sequence
atgc intronic sequence ATGC exonic sequenceTGAAAAACAAGTGCAAGGTGTGTTAAACCTGATTGATCTGGCTGGAAGTGAAAGACTGTCAAGGAGTGGGGCAACTGGGGACCGGTTAAAGGAAACTCAGgtatctatttgatttgcatttctgtgaatttgagctctctgtcaacaattctacttttttttaataacagtaattttctttgctgtcacattcag
Basic information
species | Glycine max |
transcript | GLYMA08G06690.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G06690.1 (Glycine max), 5'ss of exon 16
lower sequence: AT4G05190.1 (Arabidopsis thaliana), 5'ss of exon 15
TGAAAAACAAGTGCAAGGTGTGTTAAACCTGATTGATCTGGCTGGAAGTGAAAGACTGTCAAGGAGTGGGGCAACTGGGGACCGGTTAAAGGAAACTCAGgtatcta--tttgatttgcatttctgtgaatttgagctctctgtcaacaattctacttttttt-taataacagtaattttctttgctgtcacattcag
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TGAACAGCAAGTACAAGGTGTTCTTAACCTAATTGATCTTGCTGGAAGTGAGCGACTTTCAAGGAGCGGGGCAACCGGAGACCGGTTAAAGGAGACACAGgtttttgcttttaaaatacggtcttctaagtt---attcccataaattttttggactttccctctaatctttgttgtttccttcaacag---------
upper sequence: GLYMA08G06690.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv00s0532g00020.t01 (Vitis vinifera), 5'ss of exon 15
TGAAAAACAAGTGCAAGGTGTGTTAAACCTGATTGATCTGGCTGGAAGTGAAAGACTGTCAAGGAGTGGGGCAACTGGGGACCGGTTAAAGGAAACTCAGgtatctatttgatttgcatttctgtgaatttgagctctctg--tcaacaattctacttttttttaataacagtaattttctttgctgtcacattcag
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CGAACAACAAGTACAAGGTGTCTTAAACCTCATTGATCTTGCGGGAAGTGAGCGACTCTCCAAGAGTATGTCAACTGGAGACCGGTTGAAGGAAACTCAGgtatctcttttagagatcctttttactatccaccctttttgatttgtttttaatattcattctaaataattattctgaccttcccttaaaaaatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9903066|gb|BE612034.1|BE612034EST: AAAGACTGTCAAGGAGTGGGGCAACTGGGGACCGGTTAAAGGAAACTCAT GCTATCAACAAAAGTCTCTCGTCTTTGAGCGATGTCATATTTGCTTTGGCA
genomic: AAAGACTGTCAAGGAGTGGGGCAACTGGGGACCGGTTAAAGGAAACTCAGgtatctattt ... tcacattcagGCTATCAACAAAAGTCTCTCGTCTTTGAGCGATGTCATATTTGCTTTGGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAAAAACAAGTGCAAGGTGTGTTAAACCTGATTGATCTGGCTGGAAGTGAAAGACTGTCAAGGAGTGGGGCAACTGGGGACCGGTTAAAGGAAACTCAGgtatctatttgatttgcatttctgtgaatttgagctctctgtcaacaattctacttttttttaataacagtaattttctttgctgtcacattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA