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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGAAGAATTCAGTGTCAGAGTGGAACAAAGCCGGAGATACTATCAAACATATGTGAATTATTATGCTTTTGTGTCCTACATCATCCATACAGAATAAAgtatttccttgttgctctgcagtatcggttgactttttgctgttaagcatggaaattatgttcatggttctctttgctgtttttag

Basic information

species Glycine max
transcript GLYMA07G37040.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G37040.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 18
GACGAAGAATTCAGTGTCAGAGTGGAACAAAGCCGGAGATACTATCAAACATATGTGAATTATTATGCTTTTGTGTCCTACATCATCCATACAGAATAAAgtatttccttgt-tgctctgcagtatcg--gttgactttttgctgttaagcatggaaattatgttcatggttctctttgctgtttttag
   ||| | || |   |||||     |||||||| || ||||| |||||||| |||||| |  | |||||||||||  | || |||||||| ||||||||||| |   |||  |||| ||| || |     || | | |||| |||   || ||  ||        ||  ||   ||| ||||||  ||
ATGGAAAAGTTGAAAATCAGATCACCACAAAGCCTGAAATACTGTCAAACATTTGTGAACTGCTGTGCTTTTGTGTTTTGCACCATCCATATAGAATAAAgtaatcttttggatgctttgctgtgtgatcatttaatatttgatgtcctgc-tgctaacag-----attatttctttttctgtttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15200487|gb|BI424374.1|BI424374
EST:     ATATGTGAATTATTATGCTTTTGTGTCCTACATCATCCATACAGAATAAA                         GTGCAACTTTCTTCTTAATAATGTGATTGAAAAAATATTGCTATTGACACG
genomic: ATATGTGAATTATTATGCTTTTGTGTCCTACATCATCCATACAGAATAAAgtatttcctt ... ctgtttttagGTGCAACTTTCTTCTTAATAATGTGATTGAAAAAATATTGCTATTGACACG
EST: gi|193670142|gb|FK608654.1|FK608654
EST:     ATATGTGAATTATTATGCTTTTGTGTCCTACATCATCCATACAGAATAAA                         GTGCAACTTTCTTCTTAATAATGTGATTGAAAAAATATTGCTATTGACACG
genomic: ATATGTGAATTATTATGCTTTTGTGTCCTACATCATCCATACAGAATAAAgtatttcctt ... ctgtttttagGTGCAACTTTCTTCTTAATAATGTGATTGAAAAAATATTGCTATTGACACG
EST: gi|193609882|gb|FK563444.1|FK563444
EST:     ATATGTGAATTATTATGCTTTTGTGTCCTACATCATCCATACAGAATAAA                         GTGCAACTTTCTTCTTAATAATGTGATTG
genomic: ATATGTGAATTATTATGCTTTTGTGTCCTACATCATCCATACAGAATAAAgtatttcctt ... ctgtttttagGTGCAACTTTCTTCTTAATAATGTGATTG
EST: gi|208237021|gb|GE034301.1|GE034301
EST:     TCCATACAGAATAAA                         GTGCAACTTTCTTCTTAATAATGTGATTGAAAAAATATTGCTATTGACACG
genomic: TCCATACAGAATAAAgtatttcctt ... ctgtttttagGTGCAACTTTCTTCTTAATAATGTGATTGAAAAAATATTGCTATTGACACG
EST: gi|193673711|gb|FK617264.1|FK617264
EST:     ATATGTGAATTATTATGCTTTTGTGTCCTACATCATCCATACAGAATAAA                         GTGCAACTTTCTTCTTAATAATGTGATT
genomic: ATATGTGAATTATTATGCTTTTGTGTCCTACATCATCCATACAGAATAAAgtatttcctt ... ctgtttttagGTGCAACTTTCTTCTTAATAATGTGATT
EST: gi|207737399|gb|GD714085.1|GD714085
EST:     TGCTTTTGTGTCCTACATCATCCATACAGAATAAA                         GTGCAACTTTCTTCTTAATAATGTGATTGAAAAAATAATTGCTATCGACAC
genomic: TGCTTTTGTGTCCTACATCATCCATACAGAATAAAgtatttcctt ... ctgtttttagGTGCAACTTTCTTCTTAATAATGTGATTGAAAAAAT-ATTGCTATTGACAC