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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGTTAGCAGTACCAGCTGATGCTACAATGCAACCTGTGAAATCAACTTTAGATGTCATTAAGTTAATGGACATTGGCCTAAAAAATAGAGCCAAGGGGgttctactgctatgaatgaaagaagtagtcgttctcacaggtttgtcttttcactctcgtaaaattcaacaaagcaagttttctagtataatgactttcaataactcatgtgcacag

Basic information

species Glycine max
transcript GLYMA07G10190.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G10190.1 (Glycine max), 5'ss of exon 16
lower sequence: AT1G73860.1 (Arabidopsis thaliana), 5'ss of exon 15
TGGGTTAGCAGTACCAGCTGATGCTACAATGCAACCTGTGAAATCAACTTTAGATGTCATTAAGTTAATGGACATTGGCCTAAAAAATAGAGCCAAGGGGgttctactgctatgaatgaaagaagtagtcgttctcacaggtttgtctt----ttcactctcgtaaaattcaacaaa-gcaagttttc--tagtataatgactttcaataactcatgtgcacag------------
                                      ||| |||||||| |||||| ||||  || ||||||||||| ||| | ||| |||||  |  |||||||||||  |||||||||||||||||||||| || |||||   |||    ||||  |||   ||    ||||||     ||||||   ||         |||  | |    || |  |               
--------------------------------------TGACATCAACTTCAGATGTGATTACATTGATGGACATTGGACTACAGAATCGAGCC--GTTGGTTCTACTGCCTTGAATGAAAGAAGTAGTCGTTCACATAGgttctccttcatattcatcctctagaaccaaaacaaatatgtgttttcaacagccctccaggtttttacactgaatctatatgttttcttatgcag

upper sequence: GLYMA07G10190.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv17s0000g03700.t01 (Vitis vinifera), 5'ss of exon 16
TGGGTTAGCAGTACCAGCTGATGCTACAATGCAACCTGTGAAATCAACTTTAGATGTCATTAAGTTAATGGACATTGGCCTAAAAAATAGAGCCAAGGGGgttctactgctatgaatgaaagaagtagtcgttctcacaggtttgtcttttcactctcgtaaaattcaa----caaa--gcaagttttcta-gtataatgactttcaataactcatgtg--cacag
                                      | |||||||| | |||||| ||  | |||||||||||||| | ||| |||||| |   |  ||| | ||||||||||||||||||||||| || || |||||||| ||| ||||| | |   | | | | |    || |  | |  | |||||  | | ||||  |||| | |    |||     |||
--------------------------------------TCAAATCAACCTCAGATGTAATGGAATTAATGGACATTGGACAAAAGAATAGATCT--GTAGGTGCCACTGCTATGAATGAAAGAAGTAGCCGCTCCCACAGgtt-gtcatttcatttttagatattaccatcttcagactgtatatgttctacatgttatgatcttcacttagatgtgttattgcag