Sequence
atgc intronic sequence ATGC exonic sequenceGTGGCATTGGCTGAAAAAACTGCTGTATTGTTCACAAAAGATGGGGATCAACACAATAACCTTCATGACATGCAGTGCATGTGgttggtatataatgatattttaatattttgcacatcaaacgaatattgtggtttaatttcttgacatgtcacatctacctttggaag
Basic information
species | Glycine max |
transcript | GLYMA07G03850.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G03850.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 16
GTGGCATTGGCTGAAAAAACTGCTGTATTGTTCACAAAAGATGGGGATCAACACAATAACCTTCATGACATGCAGTGCATGTGgttggtatataatgatattttaatattt-tgcacatcaaacgaatattgtggtttaatttcttgacatgtcacatctacctttggaag
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GTGGCTCTTGCAGAAAAAACAGCTGTGTTGTTCACAAAAGATGGGGATCAGCATAACAACCTTCATGACATGCAGTGCATGTGgtatgtccttttccacttgattgtaactgtgtgcattatggagttgcccctgctaaatgt-ttacaatgttat-----tcgttgaaag
upper sequence: GLYMA07G03850.1 (Glycine max), 5'ss of exon 16
lower sequence: PP1S67_222V6.2 (Physcomitrella patens), 5'ss of exon 16
GTGGCATTGGCTGAAAAAACTGCTGTATTGTTCACAAAAGATGGGGATCAACACAATAACCTTCATGACATGCAGTGCATGTGgttggtatataatgatat-tttaatattttgcacatcaaacgaatattgtggtttaatttcttgacatgtcacatctacctttggaag-----------------------------
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GTCGAACTTGCTGAGAAAACTGCTGTATTGTTCACAAAGGATGGTGATCAGCACAATAACTTGTTCGACATGCAATGCATGTGgtgagcattttgtaaaatctttgaaaaattggggag-aagcgatttgcgctctatagatgtttgttg-atcatgtgattataggcaagagatatctgatttatttgatgtttttcag
upper sequence: GLYMA07G03850.1 (Glycine max), 5'ss of exon 16
lower sequence: EFJ27872 (Selaginella moellendorffii), 5'ss of exon 15
-----------------GTGGCATTGGCTGAAAAAACTGCTGTATTGTTCACAAAAGATGGGGATCAACACAATAACCTTCATGACATGCAGTGCATGTGgttggtatataatgatattttaatattttgcacatcaaacgaatattgtggtttaatttcttgacatgtcacatctacctttggaag
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TGTTGCAAGCCGACCAGGTTGAACTTGCCGAGAAAACTGCCGCGCTCTTCACCAAGGATGGCGATCAACACAACAATCTGTATGACATGCAGTGCATGTGgtaagtatttg-------ttttgtgtttcagatgctctaaaagtcct-cgccttag-------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193406363|gb|FK373012.1|FK373012EST: ACAAAAGATGGGGATCAACACAATAACCTTCATGACATGCAGTGCATGTG GTATGAGCTTGCCTCGGGTGAAAGCTACTTCCGTCAGGGTGATCTTGGACG
genomic: ACAAAAGATGGGGATCAACACAATAACCTTCATGACATGCAGTGCATGTGgttggtatat ... cctttggaagGTATGAGCTTGCCTCGGGTGAAAGCTACTTCCGTCAGGGTGATCTTGGACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGCATTGGCTGAAAAAACTGCTGTATTGTTCACAAAAGATGGGGATCAACACAATAACCTTCATGACATGCAGTGCATGTGgttggtatataatgatattttaatattttgcacatcaaacgaatattgtggtttaatttcttgacatgtcacatctacctttggaag
- - - - - - - - - - - - - - - - - - AAGATG