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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGGTGTGGAGCTACTTAAATCTAACAACGAGGGGAATGAATCTTTGCTCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAGgtatgcttgaaatttaattgaatttcatagcacatgtatctatttcgtgtactttctctgtccatagtgcaattcaaattctctaacccaaaatggtttt...

Basic information

species Glycine max
transcript GLYMA07G01940.1
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254347694|gb|GR853943.1|GR853943
EST:     TCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAG                         GCATTGCCAGTGTTCACTTTCTCGAACCAGGCTGGGCTTGACATGCTTGAG
genomic: TCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAGgtatgcttga ... gtttatgcagGCATTGCCAGTGTTCACTTTCTCGAACCAGGCTGGGCTTGACATGCTTGAG
EST: gi|58020029|gb|CX706771.1|CX706771
EST:     TCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAG                         GCATTGCCAGTGTTCACTTTCTCGAACCAGGCTGGGCTTGACATGCTTGAG
genomic: TCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAGgtatgcttga ... gtttatgcagGCATTGCCAGTGTTCACTTTCTCGAACCAGGCTGGGCTTGACATGCTTGAG
EST: gi|193655293|gb|FK596583.1|FK596583
EST:     GTGCTGCACTCTAAAG                         GCATTGCCAGTGTTCACTTTCTCGAACCAGGCCGGGCTTGACATGCTAGAG
genomic: GTGCTGCACTCTAAAGgtatgcttga ... gtttatgcagGCATTGCCAGTGTTCACTTTCTCGAACCAGGCTGGGCTTGACATGCTTGAG
EST: gi|209708424|gb|BW665399.1|BW665399
EST:     TCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAG                         GCATTGCCAGTGTTCACTTTCTCGAACCAGGCTGGGCTTGACATGCTTGAG
genomic: TCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAGgtatgcttga ... gtttatgcagGCATTGCCAGTGTTCACTTTCTCGAACCAGGCTGGGCTTGACATGCTTGAG
EST: gi|22930734|gb|BU547873.1|BU547873
EST:     TCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAG                         GCANNNCCAGTGTTCACTTTCTCGAACCAGGCTGGGCTTGACATGCTTGAG
genomic: TCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAGgtatgcttga ... gtttatgcagGCATTGCCAGTGTTCACTTTCTCGAACCAGGCTGGGCTTGACATGCTTGAG
EST: gi|298174070|gb|HO017406.1|HO017406
EST:     TCAAGTCCTTGTGGCATCACCCAGATGCAATATTGTGCTGCACTCTAAAG                         GCATTGCCAGTGTTCACTTTCTCAAACCAGGCTGGGCTTGACATG
genomic: TCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAGgtatgcttga ... gtttatgcagGCATTGCCAGTGTTCACTTTCTCGAACCAGGCTGGGCTTGACATG
EST: gi|31472447|gb|CD414475.1|CD414475
EST:     TCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAG                         GCATTGCCAGTGTTCACTTTCTCGAACCAGGCTGGGCTTGACATGCTTGAG
genomic: TCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAGgtatgcttga ... gtttatgcagGCATTGCCAGTGTTCACTTTCTCGAACCAGGCTGGGCTTGACATGCTTGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGGGTGTGGAGCTACTTAAATCTAACAACGAGGGGAATGAATCTTTGCTCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTAAAGgtatgcttgaaatttaattgaatttcatagcacatgtatctatttcgtgtactttctctgtccatagtgcaattcaaattctctaacccaaaatggtttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC