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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGGCGGCTATCGGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGgcgagtttcattatcttaggcttggacaatctagagggaattatggctataatttataatctataacattagtaaaggcaataccccgtttttgatctac...

Basic information

species Glycine max
transcript GLYMA07G00630.2
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G00630.1 (Glycine max), 5'ss of exon 19
lower sequence: LOC_Os04g51610.3 (Oryza sativa), 5'ss of exon 17
GTACGGCGGCTATCGGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGgcgagtt-------tcattatcttaggcttggacaatctagagggaattatggctataatttataatctataacattagtaaaggca------ataccccgtttttgatctac------
||  || |||| || || |||||||||||||| || ||||||||||||||||| || |||||||||||  |||| || |||||||   | |       ||||  ||| |   |||  || |   | ||  |  | |   || ||  || ||     | ||| |   || ||      || |||  ||| |  || |       
GTCAGGAGGCTCTCTGCATGTGAAACTATGGGTTCAGCCACAACAATTTGCAGCGACAAGACAGGAACGCTGACTTTGAATCAGgttgggtgctgttgtcatattctcaatgttgtgcacttcggtggatacaaag---atgatccatgattccagaaatttgctcagccacgacttattccctatttcttgtcaattttaag

upper sequence: GLYMA07G00630.1 (Glycine max), 5'ss of exon 19
lower sequence: GRMZM2G391042_T02 (Zea mays), 5'ss of exon 17
GTACGGCGGCTATCGGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGgcgagtttcattatcttaggcttggacaatctagagggaattatggctataatttataatctataac-attagtaaaggcaataccccgtttttgatctac--
||  || |||| || || || ||||| ||||| |||||||||||||| |||||||| ||||| || || ||||| |||||||||| |   |    | | ||    ||  |||  ||  ||  | ||  |  | | |  | | ||        |||   |||  |  | |  | |  ||||| |    
GTGAGGAGGCTTTCTGCATGCGAAACGATGGGTTCTGCCACAACAATCTGCAGTGACAAGACTGGCACCTTGACGTTAAATCAGgtgcaatggtgtttattcactttatacacgcttcagatatttccgtttgttaaatctgattggccctgattttaaaattctcttcttcctgattgattttaag

upper sequence: GLYMA07G00630.1 (Glycine max), 5'ss of exon 19
lower sequence: GRMZM2G140328_T02 (Zea mays), 5'ss of exon 17
GTACGGCGGCTATCGGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGgc------gagtttcattatcttaggcttgg------acaatctagagggaattatggctataatttataatctataac-attagtaaaggcaataccccgtttttgatctac--
||  || |||| || || |||||||| ||||| |||||||||||||| |||||||| ||||| || || || || ||||||||||       | ||||  | |  |||  | |        |||   |  ||  |||| ||  | |    | | ||        |||  ||||  |  | |  | |  ||||| |    
GTCAGGAGGCTTTCTGCATGTGAAACGATGGGTTCTGCCACAACAATCTGCAGTGACAAGACTGGCACCTTAACTTTAAATCAGgtgcaatggtgtttattcactttatacatactgacatacatgtttcagataattctgtttgttgaatctgattggccctgatttttaaattctcttcttcctggttgattttaag

upper sequence: GLYMA07G00630.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 18
GTACGGCGGCTATCGGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGgcgagtttcattatcttaggcttggacaatc-tagagggaattatggctataatttataatctataacattagtaaa-ggcaataccccgtttttgatctac
|| ||  |||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||| |||   |||  |   | || | | |      |    ||   |  |     | |   | | |   ||     |||  |   ||    ||   || | ||||    
GTGCGTAGGCTTTCAGCCTGTGAAACTATGGGCTCTGCAACAACAATTTGCAGTGATAAGACTGGAACATTAACCTTGAATAAGgtctgttgtaaatttttggacctttctttttgctgaactaccttccaattttcctaaaagcttaagcttttaagatttgggtccacaatgtatatgatgc--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193671067|gb|FK608345.1|FK608345
EST:     CTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAG                         ATGACTGTAGTTGAGGCATATGTTGGGAGCACGAAAGTATATTCACCAGAT
genomic: CTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGgcgagtttca ... ggcattacagATGACTGTAGTTGAGGCATATGTTGGGAGCACGAAAGTATATTCACCAGAT