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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGAAAATGCCCTGGATCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCTCCTTATTGAGTGCACAAACACTGgtacatcatatatttttattttggaatttgtttacctgccaaaaactcctggcattatcatctattacacactaaagaacaactttattttttatgcatt...

Basic information

species Glycine max
transcript GLYMA06G17300.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17300.1 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os09g33600.1 (Oryza sativa), 5'ss of exon 14
GCAGAAAATGCCCTGGATCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCTCCTTATTGAGTGCACAAACACTGgtacatcatatatttttattttggaatttgtttacctgccaaaaactcctggcattatcatctattacacactaaagaacaactttattttttatgcatt
||||| | |||  ||||||||||||||||||| ||||| ||||||||||| || || || ||  ||||  | ||| | |  | ||    ||  |   || || ||  |  | |||  | |  |     || |  ||| | || |||   |||||||        || |             
GCAGAGAGTGCGATGGATCAGATGGATTGGATTGAAAAAATAACTGGTGTCATCGCTTCTTTGCTGAGCTCCCAATCGCCCGAACGGgtta-gtgagtacttagg--tggggttagttacatag----ccag--attttgatttatctgacactaatattttgtttcag------------

upper sequence: GLYMA06G17300.1 (Glycine max), 5'ss of exon 16
lower sequence: LOC_Os08g42530.1 (Oryza sativa), 5'ss of exon 14
GCAGAAAATGCCCTGGATCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCTCCTTATTGAGTGCACAAACACTGgtaca--tcatatatttttattttggaatttgtt-tacctgccaaaaactcctggcattatcatctattacacactaaagaacaactttattttttatgcatt
||||| | |||  | ||||| ||||||||||| |||||||| |||||||| ||||| || ||  | ||  ||||| | |  | |||  |||    |   |      || ||| || |   ||      ||   | | ||| || | ||  | |   | | |  |     |  | |||  |    
GCAGAGAGTGCAATAGATCAAATGGATTGGATTGAAAAGATTACTGGTGTCATTGCATCTTTGCTTAGCTCACAATCCCCAGAACAGgtcactattcgatgacccagattttattgtttatgtatttgacatgttgaattttcgtttaccaaaatgtgatggtctgtacttctgtttcag----

upper sequence: GLYMA06G17300.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G093670_T01 (Zea mays), 5'ss of exon 5
GCAGAAAATGCCCTGGATCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCTCCTTATTGAGTGCACAAACACTGgtacatcatatatttttattttggaatttgtttacctgccaaaaactcctggcattatcatctattacacactaaagaacaactttattttttatgcatt
||||| | |||  | ||||||||||||||||| ||||||||||||||||| |||||| | ||  |||   ||||| | |  | |||   ||    |  ||   ||  | |||||   |  ||    || |||| ||    ||  | |  ||| ||     |   | | |||          
GCAGAGAGTGCAGTAGATCAGATGGATTGGATTGAAAAGATAACTGGTGTTATTGCCCCTTTGCTGAACTCACAATCCCCAGAACAGgttagtaatggat---ggtctctgtttggattgcatgt-cttctggaat----attcagtttacaatacttggctgttctgtttcag-------

upper sequence: GLYMA06G17300.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM5G872204_T02 (Zea mays), 5'ss of exon 14
GCAGAAAATGCCCTGGATCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCTCCTTATTGAGTGCACAAACACTGgtacatcatatatttttattttggaatttgtttacctgccaaaaactcctggcattatcatctattacacactaaagaacaactttattttttatgcatt
||||| | |||  | ||||||||||| ||||| ||||||||||||||||| |||||||| ||| ||||  ||||| | |  | |||   ||    |  ||   ||  | |||||   |  ||   | || ||| ||    ||  | |  ||| ||     |   | | |||          
GCAGAGAGTGCAGTAGATCAGATGGACTGGATTGAAAAGATAACTGGTGTTATTGCCTCTTTACTGAGCTCACAATCGCCAGAACAGgttagtaatggat---ggcctctgtttggattgcatgtattc-tggaat----attcagtttacaatacttggctgttctgtttcag-------

upper sequence: GLYMA06G17300.1 (Glycine max), 5'ss of exon 16
lower sequence: AT5G61980.1 (Arabidopsis thaliana), 5'ss of exon 14
GCAGAAAATGCCCTGGATCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCTCCTTATTGAGTGCACAAACAC-TGgtacatca--tatatttttattttggaatttgtttacctgccaaaaactcctggcattatc-atct--attacacactaaagaacaactttattttttatgcatt---
||||| ||||| | |||||||||||| ||||| ||||| |||||||| |||||||| || || ||||||   ||||||| ||  | | ||   ||  ||  |||||  ||  | ||   ||||  |  | | || |  | | | ||||    |    | ||| | |   |||||  ||  |  |      
GCAGAGAATGCACAGGATCAGATGGACTGGATCGAAAAAATAACTGGAGTAATTGCTTCTTTGTTGAGTTTCCAAACACCTGAAAGAGCAATCATGgttagattttataagatatta--ctgctgattatttcttgtctgacccatcttcgctgttgagtaatgtatc-ctttaccttcaactcgaccag

upper sequence: GLYMA06G17300.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv17s0000g00310.t01 (Vitis vinifera), 5'ss of exon 14
GCAGAAAATGCCCTGGATCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCTCCTTATTGAGTGCACAAACACTGgtacatcatatatttttattttggaatttgtttacctgccaaaaactcctggcattatcatctattac-acactaaagaacaactttattttttatgcatt
||||| ||||| |||||||| ||||| ||| | |||||||||||||| ||||| || || || |||||| |  |  |||| | | |   || ||  | |     |||  | |  |  ||       |   ||        || | ||   |   |  |   ||| | ||| |          
GCAGAGAATGCACTGGATCAAATGGACTGGGTTGAAAAGATAACTGGAGTAATAGCTTCTTTGTTGAGTTCCGACGCACTTGAA-AGGgtaaatactaa-----gaaagtctacatttgtatgttgccattgattcatatatttgttgtgatgattgaacccaattctatgtcag-------