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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTATGGAACTGGCACAAGAAAGAAGAGGGCAGTTCAAAGAAATGAAATTTATTGCTGAAAATAGGGCATCAATCACGTATGAATTACCATTAGCAGAGgtaatctcttgcattagttcttgtcaattgaccctaaaaactcatgcttctgtttgactagttttggctctcaagcatctgaatctttttgaatgtcaattttgtag

Basic information

species Glycine max
transcript GLYMA06G16700.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16700.1 (Glycine max), 5'ss of exon 16
lower sequence: AT5G08650.1 (Arabidopsis thaliana), 5'ss of exon 16
ACTTATGGAACTGGCACAAGAAAGAAGAGGGCAGTTCAAAGAAATGAAATTTATTGCTGAAAATAGGGCATCAATCACGTATGAATTACCATTAGCAGAGgtaatctcttgcattagttcttgtcaat-tgaccctaa--aaactcatgcttctgtttgactagttttggctctcaagcatctgaatctttttgaatgtcaattttgtag
 |||||||| || || ||||| || |||||| |||||||||||||||||| ||| ||||| || || || ||||||   ||||| |||||  | |||||||| |  |||    ||       || ||  | |||| ||  ||| |   ||      |    |  || ||       | | |||   |  |         | |||||| ||
GCTTATGGAGCTCGCTCAAGAGAGGAGAGGGGAGTTCAAAGAAATGAAATATATAGCTGAGAACAGAGCTTCAATCCTCTATGAGTTACCTCTTGCAGAGgtgagatctctgcttgtgcagagttaagataaccccaatgaaagtttagccatgtctctcttgattatgtaaactgatcttcttgttaatcgctccctgccattttgcag

upper sequence: GLYMA06G16700.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 16
ACTTATGGAACTGGCACAAGAAAGAAGAGGGCAGTTCAAAGAAATGAAATTTATTGCTGAAAATAGGGCATCAATCACGTATGAATTACCATTAGCAGAGgtaatctcttgcattagttcttgtcaattgaccctaaaaactcatgcttctgtttgactagttt-tggctctcaagcatctgaatctttttgaatgtcaattttgtag------------------------------
 || |||||| |||| |||||  | |||||  ||||||||||||||||||||||  |||| ||||| |||||||| || ||||||||||| ||||||||||||   | |   |||   || |  || |||     | ||||| |    |    |||||||||   |   | |   |  ||   |  ||||||  |||  ||    |                                
TCTCATGGAATTGGCTCAAGACCGTAGAGGAGAGTTCAAAGAAATGAAATTTATCACTGAGAATAGAGCATCAATTACCTATGAATTACCCTTAGCAGAGgtaccttttcctattcaatcat-ccacttgctttgataaactgaaa--tgcagttgactagtaaattaatattgggtctccctaattttttggctgttgatagattgaattttctctggttttgaaattcattcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6134602|gb|AW132995.1|AW132995
EST:     TGAAAATAGGGCATCAATCACGTATGAATTACCATTAGCAGAG                         ATGGTTGGTGATTTCTTTGACCAGTTGAAGTCGAGAAGTAAGGGTTATGCT
genomic: TGAAAATAGGGCATCAATCACGTATGAATTACCATTAGCAGAGgtaatctctt ... aattttgtagATGGTTGGTGATTTCTTTGACCAGTTGAAGTCAAGAAGTAAGGGTTATGCT
EST: gi|120494646|gb|EH222813.1|EH222813
EST:     TTATTGCTGAAAATAGGGCATCAATCACGTATGAATTACCATTAGCAGAG                         ATGGTTGGTGATTTCTTTGACCAGTTGAAGTCAAGAAAGTAAGGGTTATGC
genomic: TTATTGCTGAAAATAGGGCATCAATCACGTATGAATTACCATTAGCAGAGgtaatctctt ... aattttgtagATGGTTGGTGATTTCTTTGACCAGTTGAAGTCAAGAA-GTAAGGGTTATGC