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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCATTGTTTGGAGAAAAATGGCAAGCAGACAACAAAAATGGTCTCGTATTGTGCTTATCACAGgtatgcaatcctcaattgtgattaatcatcctcttttgcccctttctaccattttctttgtagactttgctttttccccaacaattgtctttttgtaattgcaaaaatataggtttatctgaaattctcgttaatctaaatcttattttcagcctttcatcttaatcacgtctattgttttttgcag

Basic information

species Glycine max
transcript GLYMA06G13330.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 16
lower sequence: AT4G27910.1 (Arabidopsis thaliana), 5'ss of exon 15
TTGCATTGTTTGGAGAAAAATGGCAAGCAGACAACAAAAATGGTCTCGTATTGTGCTTATCACAGgtatgcaatcctca--attgtgattaatcatcctcttttgcccctttctaccattttctttgtagactttgctttttccccaacaattgtctttttgtaattgcaaaaatataggtttatctgaaattctcgttaatctaaatcttattttcagcctttcatcttaatcacgtctattgttttttgcag
||||| || ||||||||||||||  |||||| |||||| ||||| || |||||||||||||||||||    | | ||||  | | || ||||  |   | |  ||        ||| || ||  ||   || ||     |||   | |   || |   | ||||                                                                                          
TTGCACTGCTTGGAGAAAAATGGTCAGCAGATAACAAAGATGGTGTCCTATTGTGCTTATCACAGgtgaa-atttctcagaactctgcttaaagaatttttggtg-------ttacgatgttggtttatgatttataagttttatctattgtttttggtgtgtag-----------------------------------------------------------------------------------------

upper sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 16
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 15
TTGCATTGTTTGGAGAAAAATGGCAAGCAGACAACAAAAATGGTCTCGTATTGTGCTTATCACAGgtatgcaatcctcaattgtgattaatcatcctcttttgcccctttctaccattttctttgtagactttgctttttccccaacaattgtctttt-tgtaattgcaaaaatataggtttatctgaaattctcgttaatctaaatcttattttcagcctttcatcttaatcacgtctattgttttttgcag
||||| || ||||||||||||||    |||| |||||| ||||| ||||||||| |||||||||||||     ||   ||   |  ||   ||   || ||| |  ||       |||||   |   || |||| | | |         |||| |||  ||||                                                                                          
TTGCACTGCTTGGAGAAAAATGGTCGACAGATAACAAAGATGGTGTCGTATTGTTCTTATCACAGgtaaatgttctcaaaaccttgtttg-caaaatcatttccatctg------attttgggtaatgaatttgttctct--------gttgtttttggtgtag-----------------------------------------------------------------------------------------

upper sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 16
TTGCATTGTTTGGAGAAAAATGGCAAGCAGACAACAAAAATGGTCTCGTATTGTGCTTATCACAGgtatgcaatcctcaattgtgattaatcatcctcttttgcccctttctaccattttctttgtagactttgctttttccccaacaattgtctttttgtaattgcaaaaatataggtttatctgaaattctcgttaatctaaatcttattttcagcctttcatcttaatcacgtctattgttttttgcag
|||||  | |||| |||||||||||  |||| |||||| ||||| || |||||||||||||||||||||  |||||| |  |||| | | | |     | | ||   ||   ||  |      || | |      |    ||| ||||  |    | |  |   | ||    |   | || | ||  |  |   |||  ||  || || ||    |   | |  || |  |   || | | ||     ||||
TTGCACAGCTTGGTGAAAAATGGCAGACAGATAACAAAGATGGTTTCATATTGTGCTTATCACAGgtattgaatccttacatgtg-tgagtgagaaaatatagc--tttctcacactcacacgtgcacatgcacatgacaccctaacatgttggatgtgatgggttcat--gtgctgattcaactctaccttgtgtttttcacaacctaatcaagattttctgttcatggttttgtttctggt-----gcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207795527|gb|GD766398.1|GD766398
EST:     AAAAATGGCAAGCAGACAACAAAAATGGTCTCGTATTGTGCTTATCACAG                         GGCTCCCAACCCAGATACAGTTTTGATTATGCAAACCCCTCTTGGGGTCAT
genomic: AAAAATGGCAAGCAGACAACAAAAATGGTCTCGTATTGTGCTTATCACAGgtatgcaatc ... ttttttgcagGGCTCCCAACCCAGATACAGTTTTGATTATGCAAACCCCTCTTGGGGTCAT
EST: gi|27808927|gb|CB063349.1|CB063349
EST:     GTATTGTGCTTATCACAG                         GGCTCCCAACCCAGATACAGTTTTGATTATGCAAACCCCTCTTGGGGTCAT
genomic: GTATTGTGCTTATCACAGgtatgcaatc ... ttttttgcagGGCTCCCAACCCAGATACAGTTTTGATTATGCAAACCCCTCTTGGGGTCAT
EST: gi|208262289|gb|GE059664.1|GE059664
EST:     AAAAATGGCAAGCAGACAACAAAAATGGTCTCGTATTGTGCTTATCACAG                         GGCTCCCAACCCAGATACAGTTTTGATTATGCAAACCCCTCCTTGGGG
genomic: AAAAATGGCAAGCAGACAACAAAAATGGTCTCGTATTGTGCTTATCACAGgtatgcaatc ... ttttttgcagGGCTCCCAACCCAGATACAGTTTTGATTATGCAAACCCCTC-TTGGGG